Campylobacter lari NCTC 11845: UPTC3659_0470
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Entry
UPTC3659_0470 CDS
T03552
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cln
Campylobacter lari NCTC 11845
Pathway
cln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UPTC3659_0470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cln03021
]
UPTC3659_0470 (rpoC)
03400 DNA repair and recombination proteins [BR:
cln03400
]
UPTC3659_0470 (rpoC)
Enzymes [BR:
cln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UPTC3659_0470 (rpoC)
Transcription machinery [BR:
cln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UPTC3659_0470 (rpoC)
DNA repair and recombination proteins [BR:
cln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UPTC3659_0470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AJD01344
UniProt:
A0A0A8HTX0
LinkDB
All DBs
Position
450126..454679
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKFKPIEIKEDGRPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRFKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAYYDNENTKKVEFCDVLNEEQYLNLMQR
YESSGFKARMGGEVVRDLLANLDLVELLNKLKEDIAATNSEAKKKTIIKRLKVVENFLNS
NLNSNTNIDEVVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGRSVTVPSQDMVLGIYYLSLEKD
GAKGEHKICTGIEEVMIALEAKSLDIHASIRSVVDGRKITTTAGRLIIKSILPDFVPENM
WNKVMKKKDIAALVDYVYKEGGLEVSASFLDKLKDLGFEYATKAGISISIADIIVPDQKQ
KSIEEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSANNVLSKDMMELIKKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKVTMDDCGAHEGVEINEITADGVVIETLEERILGR
VLAENIIDSITNEILFSEGTLVDEEKARIIVESGVKSVSIRTPITCKAKKGVCSKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVVAHKEGFVRFYN
LNTYEDRQGKTIVANHRNAAILLVEPKIKAPFKGTIHIEHAYEDVVVSVKAKNNEAKFIL
RKYDLAKANELAGVSGNIEGKLYIPYSDGDEVAENESIVEVIKEGWNIPNRIPYASELLV
KDGDPITQDIIAGAKGTLKFYMLKGDGLDRIRNLKKGDVVKEKGVFVVIADENDREAKRH
YIPRESVIEFDDSAFVDNPKTIIAKSSKEDKTIIAEWDAYNNTVIAEVAGTINFEDIESG
YSADEQIDEATGKRSLVINEYLPSGVRPALLIIGENDKVVRYQLEPKTVIYVNDGDKVKQ
ADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNTAVVAEIDGVVRFDKPLRSKERIII
QAEDGSSAEYLIDKSKRIQVRDGEFIHAGEKLTDGVISSHDVLRILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEIIVSQMLRQVKIVDSGHTNFIVGDLVSRRKFREENERILRYGGE
PAVAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGDQNLKLKQQN
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaacctatcgaaataaaagaagatggcagacctagagactttgaagct
tttcaattaagacttgcaagtcctgaaaaaatcaaatcatggtcttatggggaagtaaaa
aaaccagaaacgattaattatagaaccttaaagcctgaaagagatggacttttttgtgct
aaaatttttggaccagtaagagattatgaatgtctttgtggtaagtataaaaaaatgcgt
tttaaaggcattaagtgtgaaaaatgtggtgttgaagttactagttctaaagtacgtcgt
tcaagaatgggacatattgaattagttactccggtagcacatatttggtatgtaaattct
ttgccaagtcgtatcggtactttgcttggtgtaaagatgaaagacttagagcgcgtattg
tattatgaagcatatatagtagaaaatccaggtgatgcttactatgataatgaaaatact
aaaaaagttgaattttgtgatgtattaaacgaagagcaatatttaaacttaatgcagcgc
tatgaaagtagtggatttaaagctagaatgggtggtgaagttgttagagatttgctagca
aatttagatcttgttgagcttttaaataaactaaaagaagatattgcagcaactaattca
gaagcaaagaaaaaaactatcatcaaacgtttaaaagtggtagaaaatttcttaaatagt
aatttaaatagcaatacaaatattgatgaagtggtacctaatcgtcctgagtggatgatg
attacaaatttacctgtattaccacctgatttaagacctttagtagctttagatggtgga
aaatttgcagtttctgatgtgaatgatttatatagaagggttatcaatagaaatacgcgt
ttaaaaagacttatggagcttgatgcacccgaaattatcattagaaatgaaaaaagaatg
ctacaagaagcagttgatgctttatttgataatggtagaagagcaaatgcggttaaaggt
gcaaataaacgtccattaaaatctttaagtgaaatcatcaaaggaaaacaaggccgtttc
agacaaaatctacttggtaaaagggtggatttttcaggtcgtagtgttattgttgttggg
ccaaaacttagaatggatcaatgtggtttacctaaaaaaatggctttagaattatttaag
ccacacttattagctaaacttgaagaaaaaggttatgctaccactgtaaaacaagccaaa
aaaatgatagaaaataaaaccaacgaagtttgggagtgtttagaagaggttgttaaaggt
catcctgtaatgcttaaccgtgctccaaccttgcataagctttccatccaagctttccat
ccggttcttgtagagggcaaggcaattcaacttcatccattagtatgtgcagcgtttaat
gctgactttgatggggaccaaatggctgtgcatgtgcctttatcacaagaagcaatagct
gagtgtaaagtattaatgctctcatctatgaatatcttgcttccagcaagtggtcgttcc
gtgactgtgccttctcaagatatggttttggggatttattatctatctttagaaaaagat
ggtgctaagggtgagcataaaatttgtacaggtattgaagaggttatgattgccctagaa
gcaaaatctttagatattcatgcaagtataagaagtgtggttgatggtagaaaaatcact
acaactgcgggaagattaatcattaagtctatcttgcctgattttgttcctgaaaatatg
tggaataaagtcatgaagaaaaaagatattgcagctttggttgattatgtttataaagaa
ggtggccttgaagtaagtgctagttttttagataaattaaaagatcttggttttgaatat
gcaacaaaagcgggtatttctatttcaattgctgatattattgtgccagatcaaaagcaa
aaaagtatagaagaagctaaaaagcaggtaagagaaattcaaaattcatataatttaggt
ttgattacctcgggtgaaagatataataagattattgatatttggaaaagtgctaataat
gtcttatcaaaagatatgatggagttgattaaaaaagacaaagaaggatttaactctatt
tatatgatggcagattctggtgctaggggttcagcagctcaaatttcacagcttgccgcg
atgaggggtcttatggctaaacctgatggttctattattgaaacaccgattatttcaaac
ttccgtgaaggacttaacgttcttgaatatttcatttcaactcacggtgccagaaaaggt
cttgcagatacagccttaaaaacagcaaatgcaggttatttgacaagaaagcttatcgat
gtggcgcaaaatgtaaaagttacaatggatgattgtggtgcgcatgagggtgttgaaatt
aatgaaatcactgcagatggtgttgtaattgaaaccttagaagaaagaattttaggaaga
gttttagctgaaaatattattgactctattactaatgaaattttattctcagaaggtact
ttagttgatgaggaaaaagctagaattattgttgaaagcggagtaaaaagtgtaagtatt
agaactcctattacttgtaaagctaaaaaaggagtttgttctaaatgctatggtattaat
ctaggtgaaggcaaattagttaaaccaggtgaagctgtaggtattatatctgctcaatca
attggtgagccaggaacacagcttacgttaagaactttccatagtggtggtactgctagt
acagatttacaagatcgccaagtagtagcacacaaagaaggttttgtaagattttataat
cttaatacctatgaagatagacaaggtaaaactatagtggccaatcaccgcaatgctgct
attttacttgttgaaccaaaaataaaagctccatttaaaggaactatccatattgaacat
gcatatgaggatgtagtggttagtgttaaagcgaaaaacaatgaagctaaatttatatta
agaaagtatgacttagcaaaagctaatgagcttgcgggtgtaagtggtaatatcgaaggt
aaattatatattccatatagcgatggtgatgaagtagctgaaaatgaaagtattgtagaa
gtaatcaaagaaggttggaatataccaaatcgtattccttatgcgagtgaattactagta
aaagatggagatcctatcactcaagatattatagctggcgcaaaaggtactttgaagttt
tatatgcttaaaggggatggcttagatagaattagaaatctaaaaaaaggcgatgtagtt
aaagaaaaaggtgtttttgttgttattgctgatgaaaatgatagagaagcaaaaagacat
tatataccaagggaatctgtgattgaatttgacgatagcgcttttgtggataatcctaaa
accatcatagcaaaatcaagtaaagaagataaaactattattgctgaatgggatgcatat
aacaatactgtaattgcagaagttgcaggtacaattaattttgaagatattgagtcaggt
tatagtgctgatgagcaaattgatgaagcaactggtaaaagatcgcttgttattaatgag
tatttaccaagtggagtacgtcctgcattgttaattataggtgaaaatgataaagtagtg
cgttatcaactcgaaccaaaaactgttatttatgtaaatgatggtgataaggtcaagcaa
gctgatatcctagctaaaactccaaaggcagcagctaagtcaaaagatattactggaggt
cttccaagggtatctgaattatttgaagcaagaaagccaaaaaatactgctgttgtggct
gaaattgacggggttgttagatttgataaacctttaagatcaaaagaaagaatcatcatt
caagcagaagatggaagtagtgcagagtatttgatagataaatcaaaacgcattcaagta
agagatggtgaatttatccatgcgggtgaaaaattaaccgatggagttatttcaagtcat
gatgtgcttagaattttaggtgaaaaagcattgcattattatcttatttctgaaattcag
caagtttatcgtggtcaaggtgttgtgatttctgataaacatattgaaatcatcgtatcg
caaatgctaagacaagtaaaaattgttgatagtggacatactaatttcattgtaggtgat
ttggtttcaagaagaaaattcagagaagaaaatgaaagaattttaagatatggcggtgaa
cctgctgtggctgagcctgtattgcttggggttacaagagcagctattggaagtgatagt
gtgatttcagctgcttcattccaagaaacaacaaaagttttaacagaagcaagtattgcg
ggtaaatttgattatcttgaagatctaaaagaaaatgtaatattaggtcgtatgattcct
gttggtacgggtctttatggagatcaaaatttaaaacttaaacaacaaaattaa
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integrated database retrieval system
