Mageeibacillus indolicus: HMPREF0868_0408
Help
Entry
HMPREF0868_0408 CDS
T01181
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clo
Mageeibacillus indolicus
Pathway
clo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0868_0408 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clo03400
]
HMPREF0868_0408 (mfd)
Enzymes [BR:
clo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0868_0408 (mfd)
DNA repair and recombination proteins [BR:
clo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF0868_0408 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADC91240
UniProt:
D3R0N9
LinkDB
All DBs
Position
complement(1408563..1412288)
Genome browser
AA seq
1241 aa
AA seq
DB search
MTNIDTFLARASRDKNFVALTEAVETTAGACGRHINVTGLSPTQKSYIVAALTDHFSNRQ
DAATNSQAVKQKAGQVRGWTAERGEETSRNLGAAMCLIEPDELQIRETQAALQPLLPDLQ
ILRPREINLINADAGSRRQEQDRLLTLAGLLTGRVRHVLISATALLQRLPDPDFLRRHLL
ILQGTERIQPETLEHFLLAAGYEKVSQAEAFGQFSRRGDIVDVVPPDLRQSKPDCGLRIS
FFDDEIDSFTYYSLISQRSVGNCRKSVLISPVKEVLLDVDRLDAGSCADSLADSNINAEN
LAAKIDAAGKREILSLKENNASAKVTAELNKSLAADIAKLTEGLTTAPADKWLSLIYPED
TMFWDYWQETPGPKLPVVLDEPLRLTKALDTAQAAWQERIKEGFLKGQNFLTAGLAQYTR
LDCMRRLDKEMNVITLAVIGGANGFPAIAEFVIRGRESDSYCGKDAKLTADLKDPSFPPC
TLCAVGEVRRQKLADLLRTEGVTTEQAKIIDLPLPRGFVYPAADMWVLGEQEIFAGKAKR
RRNRGSTTGVALDLFSDLRPGDLVVHDIHGIGIYKGLRSVEVDGVRRDYIWLSYANNDEL
YLPMEALDQLQKYIGVSEQQNPKLSRLGGTDWQKLKNKARDSVKKLAFDLVKLYAERRKI
KGYKFPPETTWEREFAESFPFEETDDQLRCIKEVSADMESDKVMDRLLCGDVGFGKTEVA
FRALFKAVMGGKQAALLAPTTVLAQQHYENFMNRINGFPIRVGLLSRFANDAMQHKTLSG
LATGNIDVVIGTHRLLSKDVKFKKLGLLIIDEEQRFGVEHKEKLKVNYQGVDVLTLSATP
IPRTLHMALSGIRDISVIEEAPLDRRSVLTYVMEYDPAIVIDAINREFSRHGQVFYLYNN
TAGIDAKVNELQEALPGARIAAGHGKMSEKQLEQVINDFYAGETDILVCTTIIESGIDMP
NVNTLIVENADRLGLAQLYQLRGRVGRSGRQAYAYITYRRDKVLTEVAEKRLTAIRDFTE
LGSGFKIAMKDLEVRGAGNILGGEQHGQMAAVGYDMYCRMLDEEIAKAETELNGEAGSKP
KNSLPAVETIVDIPVDAYLPREFIADEGQRMDMYKRLTAIESDRDYHDVIDELLDRFGEL
PPEVTVLAAISYIRHMASKAGIERVSRQDDRIIMRLPAGQKVNMPLIAAIMAQQSYSGEM
NFAAGAKPYIEYRIGALKPAEAVEKLRKLFMNAEKAFNDQK
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgactaatattgatacatttcttgcccgggccagccgtgacaaaaattttgtcgcgttg
accgaggcggttgaaactacggctggggcttgtggcaggcatattaatgtcactggcttg
agtccgacgcagaaatcatatatagtcgcggcattgaccgatcatttcagcaaccgacag
gacgccgccacgaattcacaggcagtcaaacagaaggccgggcaggtgagaggatggacg
gcggaacggggtgaagagaccagccggaacctaggagcagcgatgtgcttgattgagccg
gacgaattacaaatccgtgagacccaagctgctttacagccgctgctgccagatttacaa
attttgcgcccgcgtgagataaatctgattaatgccgatgccggctcccgccgtcaggaa
caagatcgcctgctaaccttggctggtttgctcaccggccgtgtccgtcatgtcttgatc
agcgcgacggctctgctgcaacgcttacctgacccggattttttgcgacggcacttgctc
atactccaaggaacggaacgtatacagccggaaacgttggaacattttttgctggccgcc
ggttacgaaaaggtcagccaagccgaagctttcggccaattttctcgccgcggcgatata
gtcgatgttgtaccaccggatttgcgtcaaagcaagccggactgcggcctgcggatatca
ttttttgatgatgagatagatagttttacttattactctttgatcagccagcgctcggtt
ggaaactgccgtaagtcggttctgatttctccggtaaaagaagttctgcttgatgtcgac
cgtcttgatgccggttcgtgtgctgatagtcttgctgattcaaacattaatgcggaaaat
ttggcggcaaaaatagatgcggccggcaagcgagaaatcctgagcctgaaagaaaacaat
gcttctgccaaggtgacggccgagcttaacaagtcacttgctgctgatatcgccaagctt
acagaaggacttacgaccgcccccgccgacaaatggttgtccttgatttatcctgaagat
acaatgttttgggactattggcaggaaacaccaggccccaaactcccggttgttttggat
gaaccgctgcgtttgactaaagcattggacacggcacaggcagcatggcaagaacggata
aaagaaggctttttgaagggccagaattttctgacggcgggattggcccaatatactcgc
ctggattgcatgcgccgtttggacaaggaaatgaacgtcatcacattggccgtcatcgga
ggtgcgaacggctttccagccattgccgaatttgtcatccgggggcgtgaaagcgacagc
tattgcggcaaagatgccaaactgacagcagatttaaaagatccctcattcccaccatgt
acgctgtgtgcggtcggcgaagtccgccggcaaaagttagctgatttactgcgcaccgaa
ggggttactaccgagcaggcgaaaattattgatctgcctttaccgcgcggttttgtttat
ccggctgctgatatgtgggtcttaggcgagcaggaaatttttgccggcaaggccaaacgt
cgccgcaaccgcggttcgacaaccggagtcgctctggatttgttcagcgatttacgtccc
ggtgatttggttgtacacgacattcacggtattggaatttacaaaggcctgcgttcagtt
gaagttgacggagttcgccgcgactatatttggctttcttatgctaacaatgacgaactt
tatctacctatggaagcattggatcagttgcaaaaatacattggtgtttccgaacagcaa
aatcccaaactcagccgtcttggcggcaccgactggcagaaactcaaaaataaggcccgt
gattccgttaaaaaactggcctttgacttggttaaactttacgccgaaagaagaaagatt
aaggggtataaatttccgccggaaacaacttgggaacgagagttcgccgagagctttccc
tttgaagaaaccgacgatcagctgcgttgcattaaggaagtgagcgcggatatggaatcc
gacaaagtcatggaccgtttgctttgcggtgatgtaggtttcggcaagacggaggtcgct
tttcgggcacttttcaaggcggtcatgggcggaaaacaagcggcattgctggctccaacc
acagttttggcccaacagcattacgagaattttatgaacagaatcaatggtttcccaatt
cgggtagggttgctcagccgctttgccaatgatgccatgcaacacaaaactttgagcggc
ttggccacgggtaatatcgacgttgttatcggtactcaccgtttgctttccaaagatgta
aagtttaaaaaacttggcttgctgataattgacgaggaacaacgctttggggtcgagcat
aaagagaaattgaaagtaaactatcagggcgttgacgttttaaccttgtccgcgaccccg
attccacgcactttgcacatggctttgtctggtatcagggatataagcgtgatcgaagag
gcacctctcgatcgacgttctgtgttgacctacgtcatggagtacgatccagcgattgtc
attgatgccatcaatcgtgagttcagccgacacgggcaagttttttatttgtataacaac
acggccggtatagatgcaaaagtgaacgagctgcaggaggctttgcccggtgcgcgaatc
gctgccggccacggaaaaatgagtgaaaaacaactagaacaggtgattaacgatttttac
gctggagagaccgatatattggtttgtaccactataattgaatccggtatagatatgccc
aatgtcaatacactaatcgttgaaaatgccgaccgtctggggttggctcagctgtatcaa
ctgcgcggtcgtgtcgggcgctccgggcgtcaagcttatgcgtacataacctatcgccgc
gacaaagttttgacggaagtggcggaaaagcggttgacagcgatccgtgactttacggaa
cttggttccggctttaaaattgccatgaaggatctggaagtacgtggagctgggaatatc
ctaggcggcgagcagcatggacagatggcggcggtaggttacgatatgtattgccgcatg
ttggatgaagaaattgccaaagcggagacggagcttaacggcgaagcgggcagcaagccg
aaaaattctctgccggcggtcgagacgatagttgatattccggttgatgcatatttaccg
cgggagttcattgctgatgaagggcagcgaatggacatgtataaacggctgacggcgatt
gagtctgaccgggattatcatgatgtcatagatgaattgttggatcgtttcggtgagctg
cctccggaagttacggtgctggcggcgatcagctatattcgtcatatggcgtccaaagcc
ggtattgaacgcgtttcccgtcaggatgatcggattataatgcgtctgccggctgggcaa
aaggtcaacatgcctttgattgcggcgattatggcccagcaaagctattcaggtgaaatg
aattttgcagcgggtgccaagccatacattgaataccggattggggcgttgaaaccggcc
gaggcggtggaaaagttgcggaaattatttatgaatgcggaaaaagcgtttaacgaccaa
aaataa
DBGET
integrated database retrieval system
