Mageeibacillus indolicus: HMPREF0868_1400
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Entry
HMPREF0868_1400 CDS
T01181
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
clo
Mageeibacillus indolicus
Pathway
clo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0868_1400 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clo03021
]
HMPREF0868_1400 (rho)
03019 Messenger RNA biogenesis [BR:
clo03019
]
HMPREF0868_1400 (rho)
Transcription machinery [BR:
clo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HMPREF0868_1400 (rho)
Messenger RNA biogenesis [BR:
clo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMPREF0868_1400 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Spore_III_AA
OB_RNB
OB_RNR_1st
S1CSD-TOTE-2
DUF3086
AT_hook
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ADC90355
UniProt:
D3QYX4
LinkDB
All DBs
Position
338843..341212
Genome browser
AA seq
789 aa
AA seq
DB search
MPQIPFAEKTKESLLEIVRLSGIIPFEEAERMSQSELAERLAELTENELPVAEKTPVTKP
VTKEKKSTSLEDGKPAQRKRGRPRKNSGVVTAIADSGEVSGEKAGGMEKVGEGEARESVS
LTATSELEPTTELTYERSNVPTTSTADEAAPPKSTNIASSETRRRGRPRKTAADSTAART
ELNPGNIQIEGQTDGRSERAGRLKAKSGLTDEAIVNDLISLPSASDSNIPDMTEVTGTAN
PTSPKKLTTSETAPASTASGFKNDRFSRPKNERYKKNRQGSSVNARADSSELTGSAPGAS
YATPATAATSSLTTPDQDLFDQVSPDQVSLEQVSTEPPKTGKATAAGTASPLATAVKDES
PASADTAALPNSESTRPAGTSTPASSNPTVTDKPARDTYYVEEKTAVGVLEIMADGYGFL
RSENFLPSNKDVFVPAQFIRRFNMRPGDLVAGPIRTQRDNDRNQALFYVRSINNAAPDKS
IRRPRFDKLTPIYPNERYRLETKREELSTRIIDLIAPIGKGQRGMIVSPPKAGKTILLQK
IANSISTNNPEVKLMVLLIDERPEEVTDMQRSIQGEVAYSTFDKTPENHVRIAELVLERA
MRLVELGEDVVILLDSITRLARAYNLTINPTGRTLSGGLDPGALYGPKRFFGAARNIENG
GSLTIIATSLIDTGSRMDEVIFEEFKGTGNMEVYLDRKLSEKRIFPAIDINRSGTRREEL
LLSPKELDAVWSIRKAFGQLDNANVTEMIINLLLRTNGNDHFVSSVNVSFNDKALFESMR
MNKPSGNNT
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaaatcccttttgcggaaaagacgaaagagtctttgctggaaattgtgcgtctg
tccggaattattccgtttgaagaagcagaacgaatgagccagtccgagctggcggaacgt
ctagccgaattaactgaaaatgaattacccgtggcagaaaaaacgcctgtgacaaaacct
gtgacaaaagaaaagaaatctacctctttggaggacggtaagccggctcaacgaaaacgt
ggccgcccacgcaaaaattccggcgtggttactgcaattgcagacagcggcgaggtaagt
ggtgaaaaggccggcggcatggaaaaggtcggtgaaggagaagcaagggaatctgtatcg
ctgacggcaacatctgagcttgagccgactacagaattgacatacgaaagatctaatgtg
ccgacgacctcaacggcagatgaggccgcccccccaaaatcgacaaatattgcctcatcc
gaaacccgaagacgcgggcgtccgcgtaaaactgccgccgattcaactgcggcccgaact
gaactgaatcctggcaacatacaaattgagggacaaactgacggacgttctgaaagagcc
ggcagattaaaggccaaatcaggcttgactgacgaagcgatagttaatgatttgataagc
cttccgtcggcctcagacagcaatattcccgatatgaccgaggtcaccggcactgctaat
ccaacttcaccaaagaaattaacgacttcagaaactgcaccggcgtctaccgcctccggt
tttaaaaatgaccgtttcagccgccccaaaaatgagcgatacaagaaaaatagacaagga
tcgtccgttaacgcacgagctgattcgagtgagctgacaggatcagcaccgggggcgtca
tatgcaacgcctgcaacagcggcgacatcttcgctcactacgcctgaccaggatttgttt
gaccaagtttcgcctgaccaggtttcgcttgaacaggtttcaacggaaccgcctaaaact
ggaaaggccactgctgccggcacagcttcacccctcgcaactgctgttaaggacgaatct
cctgcctccgctgataccgcagcattgcccaactcagaatcaactcgtcctgctggaacc
tcaactcccgcaagctccaatcccaccgttactgacaaacctgcacgcgacacatattat
gtagaagaaaaaacagcagtcggtgttctggaaattatggccgatggctacggcttcttg
cgaagtgaaaatttcctgccgagcaataaagatgtctttgttccggcacaatttattcgc
cgtttcaacatgcgaccaggtgatttagttgctggaccgatccgtacgcagcgcgataac
gatcgcaaccaggctttgttttatgttcgctcgatcaacaatgctgctcccgacaaatca
attcgccggccacgttttgacaaactcactccgatttatccgaatgaaagatatcgttta
gaaacgaagcgggaagagctttccacccgtattattgatttaatcgctccgatcggcaaa
gggcagcgcggcatgatagtttcgccgcctaaagccggtaaaaccattcttttgcaaaaa
attgccaattccatatccaccaacaacccggaagttaagctgatggtgctgctaattgac
gaacgacctgaagaagtcactgatatgcaacgttcaattcagggcgaagtcgcttattcc
acctttgacaagacccccgaaaatcatgtccgtattgcagaactagtgcttgagcgggcg
atgcgtttagtcgaattaggtgaggacgtagttattttacttgacagtattactcgtttg
gcgcgcgcctacaatttaacgataaaccctaccggccgcactttgagcggtggtcttgat
ccgggggcgttatatgggccgaaacgtttcttcggtgcggcgcgtaatattgaaaatggc
ggcagtcttacgattatcgccacatcattgattgataccggctcgcgcatggacgaagtg
atttttgaagagtttaagggcaccggcaatatggaagtttatctggatcgtaagttatcg
gaaaaacgtatcttcccagccatcgacataaaccgctccgggactcgccgcgaagaactg
ttgctcagtcccaaagagttggatgccgtttggtcaattcgcaaagcttttggacaactc
gataacgcgaatgttacggaaatgattattaatctgctgttacgcaccaacggtaatgat
cattttgtttcatcggtaaatgtatcatttaatgacaaagctctgtttgagtcgatgcgc
atgaataaaccttcgggtaataatacgtga
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