Clostridium sp. MD294: C820_000092
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Entry
C820_000092 CDS
T10174
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
clod Clostridium sp. MD294
Pathway
clod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C820_000092 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clod03400
]
C820_000092 (uvrB)
DNA repair and recombination proteins [BR:
clod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C820_000092 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C820_000092 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
cpSF2-GREB1
DUF8031
P-loop_SecA
Kinesin
DUF87
Microtub_bd
AAA_5
HVO_A0114
Mitovir_RNA_pol
Choline_kinase
Thg1C
Motif
Other DBs
NCBI-ProteinID:
USF28718
LinkDB
All DBs
Position
complement(89692..91668)
Genome browser
AA seq
658 aa
AA seq
DB search
MDFKISSQYKPTGDQPQAIEKLAEGFQKGLKYQTLLGVTGSGKTFTMANVIEKLQKPTLV
IAHNKTLAAQLYNEFKELFPDNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKL
RHSATAALLERKDVLIVASVSCIYGLGDPKSYKEMMLSLRPNMIKDRDDVLRKLIEIQYN
RNDVNFERGTFRVRGDVVEIFPVASNEHAIRVEFFGDEIDRITEIDVLTGKVLGERNHVA
IFPASHYVTPADKLQIAITRIEQELSESVKQFTKEYKLLEAQRLEQRTHYDIEMMKEIGF
CSGIENYSRHLSLREAGATPYTLLDFFPDDFLIIADESHVSIPQIRGMYEGDKSRKTTLV
EYGFRLPSALDNRPLRFEEFEKHINQLLFVSATPSVYEQKHSQQISEQLIRPTGLLDPEV
VVKPITGQIDDLIVEIQKTTAKKQKVLITTLTKKMAERLTEYLKEADIRVRYLHSDIDTL
ERLEIIKDLRTDVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETALIQTIGRAA
RNAEGRVILYADIITESMKKAITETQRRREIQKKYNEQHGIIPKTIIKKVHDVIYATKAV
EKKNKFDFEKDPQSMSIEQLQKEINKLEKEMKRAAINLEFETAAELRDKILELKKAMD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaaataagttcacaatataaacctacaggcgaccagcctcaagcaatagaa
aaattagcggaaggttttcaaaaagggttgaaatatcagactttattgggagtaacaggt
tctggaaaaacgtttactatggcgaatgttattgagaaattacaaaaacctacacttgtc
attgcacacaataaaacactagcagcacagttgtataatgaatttaaagaattatttcca
gacaatgcagtagaatattttgtcagttattatgactattatcaacctgaggcatatgta
cctagtacagatacttatattgaaaaagactctgctataaatgatgaaattgataaatta
cgacattctgcaacagcggctttgttggaaagaaaagatgtgcttattgtagcaagtgtt
tcatgtatatatggtttaggtgaccctaaaagttataaagaaatgatgctttctctccgc
cctaatatgataaaagatagagatgatgtattaagaaaactcattgaaatacaatataac
agaaatgatgtcaattttgagagaggaacattccgagtaagaggagatgttgtagagata
tttcctgtagcaagtaatgaacacgctatcagagtagaattttttggagatgaaattgat
agaattacagaaattgatgtattgacaggtaaagtattaggagaaagaaaccatgttgct
atatttcctgcttctcactatgtaacgcctgcggataaattgcaaatagcaattacaaga
atagagcaagaattaagcgaaagtgtaaaacagtttacaaaagaatataaattattagaa
gcacaacgtttagaacaaagaacacattatgatatagaaatgatgaaagaaataggattt
tgttctggcatagaaaactattcacgacatttatcattaagagaagcaggagcaacaccc
tatacattacttgacttttttccagatgattttttaatcatagcagatgagtcccatgta
tctataccacagattaggggaatgtatgagggagataaatctagaaaaacaacacttgta
gaatatggttttagactgccttctgcattagacaatagacctttacgatttgaagagttt
gaaaagcacattaatcaattactttttgtatcagcaacaccttccgtatatgagcaaaaa
cattcacagcaaatatcagaacagcttattaggcctacagggctgttagacccagaagta
gtagtaaaacccattacagggcaaatagacgatttaattgtagaaatacagaaaacaaca
gcgaaaaaacaaaaggtgttgattacaacacttactaaaaaaatggcagaacgtttgaca
gaatatttaaaagaggctgatataagagtgcgttatttacattctgatattgatacatta
gaaagattagaaattataaaagatttaagaacagatgtgtttgatgtgcttgtaggtatc
aatttattaagagaaggcttggatataccagaagtatctcttgtagcaatattagatgca
gataaagagggatttttgcgttctgaaactgctctgatacaaacaataggtagagcagca
agaaatgctgaaggtagagtaatactttatgctgatattataacagaaagtatgaaaaaa
gctattacagaaacacaaagaagaagagaaatacaaaaaaaatataatgaacaacatggc
attataccaaaaacaattataaaaaaagtacatgatgtaatatatgcaacaaaagcagta
gaaaagaaaaataaatttgattttgaaaaagaccctcaatctatgagtatagaacaactg
caaaaagaaataaataaattagaaaaagaaatgaaaagggcagcaataaatttagaattt
gaaacagcagcagaattaagggataaaatactagaattaaaaaaggctatggactaa
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