Clostridium sp. MD294: C820_000860
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Entry
C820_000860 CDS
T10174
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
clod Clostridium sp. MD294
Pathway
clod03030
DNA replication
clod03430
Mismatch repair
clod03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C820_000860
03430 Mismatch repair
C820_000860
03440 Homologous recombination
C820_000860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clod03032
]
C820_000860
03400 DNA repair and recombination proteins [BR:
clod03400
]
C820_000860
Enzymes [BR:
clod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C820_000860
DNA replication proteins [BR:
clod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C820_000860
DNA repair and recombination proteins [BR:
clod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C820_000860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
AAA_22
Antigen_Bd37
AAA_30
AAA_assoc_2
ResIII
RuvB_N
AAA_5
AAA_14
TIP49
AAA_19
Rad17
AAA_24
AAA_2
AAA_7
HEAT_2
DUF815
YjcZ
AAA_18
Motif
Other DBs
NCBI-ProteinID:
USF29469
UniProt:
N1Z629
LinkDB
All DBs
Position
complement(889923..891524)
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AA seq
533 aa
AA seq
DB search
MSYTALYRKFRPDTFASVIGQDHIVKTIKNQILTNRVSHAYLFCGTRGTGKTSTAKIFAR
AINCLSPKNGNPCNHCELCTAALENRSMNVIEIDAASNNGVDNIREIREEVKYPPTQGYY
KVYIIDEVHMLSSGAFNALLKTLEEPPAHIVFILATTDPQKVPATILSRCQRFDFHRITT
EEITQTLLNYMKTENIAVEKQALHYIARLGDGSMRDALSILDQCIAFYSDETLTLDKVLD
VVGAVDNSILFSITDAIVQKNAVVIMDFIQQIMIQGRSISQFVTELIVHLRNILICNTIE
NASTLLDISSEEYTQLQLQSKKLSKEECMYFIKTFSALQNDLKYASNERILLEVTLLKIC
SVTEEKDIDAISAKLVALERQIKNGISFIPCSSAQTENKAASSTAIFKKPPALSEDRKTI
KQQWQAIFQEVESPSLKGIISHISPEFKEETDQNLYLVCAYTALQDIVKKNIALLQQKIE
QYINKSISISVITKEEYDNWYHSIYGTAEQKNEEDAEFQSLVGTYFPEAEFQE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatacagcactttacagaaaatttcgtcctgatacttttgcaagtgtaataggg
caagaccatattgttaaaacaattaaaaatcaaatattaacaaatcgtgtttctcatgct
tatcttttttgtggtacaagaggcacaggaaaaacatctactgcaaaaatatttgcaaga
gctatcaactgtctttctcccaaaaatggaaatccttgtaatcattgcgaactttgtact
gctgcattagaaaacagaagtatgaatgttattgaaattgatgccgcctctaacaatggt
gtggacaacattagagaaattagagaagaagtaaaataccctcctacacaaggatattac
aaagtttatattattgacgaagtgcatatgctttcttcaggtgcctttaatgctctatta
aaaacattagaagaacctcctgctcatattgtatttatattagctacaacagaccctcaa
aaagttcctgctacaatattatctcgttgtcagcgttttgattttcatcgtattacaaca
gaagaaattacacaaacgcttttgaattatatgaaaacagaaaatattgctgttgaaaaa
caagctttacattacattgctcgtttaggtgatggctctatgagagatgctttaagcata
ttagaccaatgtattgctttttacagtgatgaaacacttacactagacaaagtgcttgat
gttgttggtgctgttgacaatagcattttattttctataacagatgctatagtacaaaaa
aatgctgtagtaataatggactttatacagcaaattatgatacaaggtcgttctatttct
caatttgtaacagaattgattgttcatttgagaaatattcttatctgtaacacaatagaa
aatgcctctacattattagatatttcttctgaagaatatacgcagctacaattacaatct
aaaaaattgtcaaaagaagaatgtatgtattttatcaaaacattttctgcattacaaaat
gatttaaaatatgcttctaacgaaagaatattattggaggttactttactcaaaatttgt
agtgttacagaagaaaaagatattgatgccatttctgcaaaattagtagcactagaaaga
caaataaaaaacggaatttcttttattccttgttcaagtgctcaaacagagaataaagca
gcttcctctactgctatttttaaaaagcctcctgctctctctgaagacagaaaaacaata
aaacaacaatggcaggctatttttcaagaagtagaaagcccttctttaaagggaattatt
tctcatatttcaccagaatttaaagaagaaacagaccaaaatttatatcttgtttgcgct
tatactgctctacaagatattgttaaaaaaaatatcgccttactacagcaaaaaatagaa
caatacatcaacaaaagtatttctatttctgtcattacaaaagaggaatatgataattgg
tatcattctatttatggcacagcagaacaaaaaaatgaagaagatgcagaatttcaaagc
ttagtaggaacttatttcccagaagcagaattccaagaataa
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