Clostridium sp. MD294: C820_001458
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Entry
C820_001458 CDS
T10174
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clod Clostridium sp. MD294
Pathway
clod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C820_001458 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clod03019
]
C820_001458 (cshA)
03009 Ribosome biogenesis [BR:
clod03009
]
C820_001458 (cshA)
Enzymes [BR:
clod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C820_001458 (cshA)
Messenger RNA biogenesis [BR:
clod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C820_001458 (cshA)
Ribosome biogenesis [BR:
clod03009
]
Prokaryotic type
rRNA helicases
C820_001458 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Flavi_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
USF30035
UniProt:
N1Z5A9
LinkDB
All DBs
Position
complement(1491425..1493038)
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AA seq
537 aa
AA seq
DB search
MENLKFEDMQLSSEICRAVLDMGFEEATPIQSQAISIIMQGKDVIGQSQTGTGKTAAFGI
PCLEQIDAEDKRLQAVILCPTRELAIQVSEEFRKLLKYTENIRVLPIYGGQPIDRQIAAL
KKGAQVIIGTPGRVMDHMRRRTLKMETVKMMILDEADEMLDMGFREDIETILIKVPEQHQ
TIMFSATLSPEILSLSKRFLNEPEFIKVVRKELTVPNIEQIYFDVKERTKLDALSRIIDV
YDPKLALVFCNTKKRVDEVVELLQGRGYFAEGLHGDLKQSQRDKVMQKFRNGTIEILVAT
DVAARGIDIDDIDVVFNYDVPQDEEYYVHRIGRTGRAGRTGKAFTFCVGKEIYKLRDIMR
YTKTKIIQQKLPTLSDVEEMKTNIFIEKTKSIIEEGHLTKYINLVEKLIAEDYAAIDIAA
ALLKHNLADVSVDSIDAIDDINLGGTEIYGGSSEKMVRLFLNAGKKNKVRVKDIVGAIAG
ETGVSGKILGSIDLFDDYAFIDVPAEYAKDIIHGMKNTKIKNKKVNIEIAKKTKNKK
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatttaaaatttgaagatatgcaactatcttctgaaatttgtcgtgcagtattg
gatatgggttttgaagaagcgactcctatacaatctcaggcaatttctattattatgcag
ggcaaagatgtcataggacaatctcaaacaggtacaggaaaaactgctgcttttggcata
ccttgtttagaacaaattgatgcagaagataaaagattacaagcggtaatactttgccct
actcgtgaacttgctatacaagtaagtgaagaatttagaaaattactcaaatatactgaa
aatattcgtgtattacctatttatggtggtcagcctattgacagacaaatcgctgcactc
aaaaaaggggctcaggtgattataggcacaccaggccgtgttatggaccatatgcgtcgt
cgtacgttaaaaatggaaacggtaaaaatgatgatattagatgaagcagatgaaatgcta
gatatgggatttagagaagatattgaaaccattttaataaaagtacctgaacaacatcaa
acaattatgttttctgctacgctctctcctgaaatactttctttaagcaaacgcttttta
aacgaaccagaatttataaaagtcgtaagaaaagaactcactgttcccaatattgaacaa
atttattttgatgtcaaagaaagaacaaaattagatgccctttctcgtatcattgatgta
tatgaccccaaattagcacttgtattttgtaatacaaaaaaacgtgtagatgaagtagta
gaacttttgcaaggtagaggttattttgcagaaggattacatggtgatttaaaacaatct
caaagagataaagttatgcaaaaatttagaaatggcacaatagaaatattagttgctacg
gacgtcgctgcaagaggtattgacattgacgatattgatgtagtattcaattatgatgta
cctcaagatgaagaatactatgttcatcgtataggaagaacaggtcgtgctggtagaaca
ggaaaagcatttacattttgtgtaggaaaagaaatttataaacttcgtgacattatgaga
tataccaaaacaaaaattatacagcaaaaacttcctacacttagtgatgtagaagaaatg
aaaacaaatatttttatagaaaaaacaaaatctattatagaagaaggacatttgacaaaa
tatattaatttggtagaaaaactaattgcagaagattatgctgctatagacatcgctgcg
gcacttctcaaacataatttagcagatgtcagtgtagacagcattgatgctatagatgat
attaatttaggtggtactgaaatttatggtggttcttctgaaaaaatggtacgattgttt
ttaaatgctggcaaaaaaaataaagtcagagtaaaagatattgttggtgcaattgctggt
gaaacaggcgtttctggtaaaatattaggctctattgatttgtttgatgattacgctttt
attgatgttcctgcggaatatgccaaagatattattcatggtatgaaaaatactaaaatt
aaaaataaaaaagtaaatattgaaattgctaaaaaaacaaaaaacaaaaaataa
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