Clostridium sp. MD294: C820_001661
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Entry
C820_001661 CDS
T10174
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
clod Clostridium sp. MD294
Pathway
clod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C820_001661 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clod03019
]
C820_001661 (rnr)
03016 Transfer RNA biogenesis [BR:
clod03016
]
C820_001661 (rnr)
Enzymes [BR:
clod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C820_001661 (rnr)
Messenger RNA biogenesis [BR:
clod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C820_001661 (rnr)
Transfer RNA biogenesis [BR:
clod03016
]
Prokaryotic type
tRNA degradation factors
C820_001661 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
S1CSD-TOTE-2
OB_Dis3
OB_HELZ2
OB_RNR_2nd
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
USF30220
LinkDB
All DBs
Position
1693891..1696038
Genome browser
AA seq
715 aa
AA seq
DB search
MDEQEQKEQIMKQRKQKIQNYLESKEYVPMKRKAIASLLNVPKEDREDFEEIIAQLLEEE
KIVETNKGKLMTPKSLGIEIGTFLAHSKGYGFVQREQGEDIFVPATKVNGAMHRDRVMYK
INKRKSPNKRAECEIVKIIKRGNDKIVGTYEQSKNYGFVVPDDKKITQDIFIANKYSMGA
VTGHKVVVEIRKYGDEEKNPEGVIVEVLGHINDPGVDILSIIKQYDLPVDFPEDVYQQIK
NIGMEIEPKELKNREDFRNYKTVTIDGEDAKDLDDAISLNILENGNYELGVHIADVSQYV
PENTALDKEAYRRGTSVYLVDRVIPMLPHKLSNGICSLNPGEDRLTLSCIMEIDKKGNVV
NHRVVKSVIHSDRRMTYTAVREILEDRTPKLLEEYSDFIEMFENMNQLRILLSEKRTKRG
SVNFDLPESKIILDEKGVPLEIKPYETSIATNMIEEFMLICNETVAEDFFWQEAPFLYRT
HEVPDEEKLKKMEDFIRNFGYRLKGNKDEIHPKAIQQLISKVEGKEEERIITRVVLRSMK
QARYMADNGGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKMILDGTMTEKKQRALKRNMPD
VAKQCSLRERIAEEAERETDNLKKAEYMQNKIGNEYEGMISGLTSWGIYVELPNTVEGMV
PLQSLEDDFYVYDDENMMIYGQHSNKKYLLGQKVNIVVTRVDLELKKIDFAFCEK
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcaagaacaaaaagagcaaattatgaaacaaagaaaacaaaaaatacaaaat
tatttagaaagtaaagaatatgttcctatgaaaagaaaagccattgcttcgctgttgaat
gtgccaaaagaagatagagaagattttgaagaaattatagcacaacttttggaagaagaa
aaaatagtagaaacaaataagggcaaacttatgacaccaaagtcattaggaatagaaata
ggaacgtttttagcacattcaaaaggttatggttttgtacagagagaacagggagaagat
atatttgttccagcaacaaaagtaaatggagcaatgcacagagatagagtaatgtacaaa
ataaataaaagaaaatctcctaataaaagagcagaatgtgaaattgtaaaaattataaaa
agaggaaatgataaaattgtaggcacatatgaacaatcaaaaaattatggttttgtagtg
cctgatgataaaaaaattacacaagatatatttatagccaataaatatagtatgggtgct
gtgacagggcataaagtagtagtggaaattagaaaatatggtgatgaagaaaaaaatcca
gagggtgttatagtagaagttttaggccatatcaatgaccctggagtagatatactttct
attataaaacaatatgatttgcctgttgattttccagaagatgtatatcaacaaattaaa
aatattggtatggaaatagagccaaaagaattaaaaaacagagaagattttagaaattat
aaaacagtgacaatagatggagaagatgccaaagacttagatgatgcgatttcattaaat
atattggaaaatggtaattatgaattaggtgtacacatagcagatgtttcacagtatgta
ccagaaaatacagcattagataaagaagcatatagaagaggcacaagtgtgtatttagta
gatagagtcattcctatgctacctcataagttatcaaatggtatttgttctttaaatcct
ggtgaagacaggctgacattaagctgtattatggaaattgacaaaaaaggaaatgttgta
aatcatagagtagtaaaatctgtaatacattctgataggagaatgacttatacagcagta
agagagatattggaagatagaacacctaaattattggaagaatattctgattttatagaa
atgtttgaaaatatgaaccaattaagaatactgctttcagaaaaaagaacaaaaagaggt
tctgttaattttgatttgcctgagtctaaaattatattagatgaaaaaggagtaccgtta
gaaataaaaccatatgaaacaagcatagcaacaaatatgatagaagaatttatgttgata
tgtaatgaaacagtggcagaagattttttctggcaggaagcaccatttttatatagaacg
catgaagtgcctgatgaagaaaaactcaaaaaaatggaggattttattagaaactttggt
tatcgcttaaaaggaaataaagatgaaatacaccctaaagcaatacagcaacttatttca
aaagtagaaggaaaagaagaagaaagaattattacaagagtggttcttagaagtatgaaa
caagcgagatatatggcagacaatggagggcattttggtttagcagctaaatattattgt
cattttacttctcctatcagaagataccctgatttgcaaatacacagaattatcaaaatg
atattagatggaacaatgacagaaaaaaaacaaagagcattaaaaagaaatatgcctgat
gtagcaaaacagtgttctctaagagaaagaatagcagaagaagcagaaagagaaacagac
aatctcaaaaaagcagagtatatgcaaaataaaataggtaatgaatatgagggaatgatt
tcaggattaacaagttggggaatatatgtagaattgcctaatacagtagagggaatggtt
cctttgcaaagtttggaagatgacttttatgtttatgacgatgaaaatatgatgatttat
ggacaacattccaataaaaagtatctattaggacaaaaagtaaatattgtagtaacaaga
gtagatttggaactaaagaaaattgattttgcattttgtgaaaaataa
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