Clostridium sp. MD294: C820_002039
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Entry
C820_002039 CDS
T10174
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
clod Clostridium sp. MD294
Pathway
clod03420
Nucleotide excision repair
clod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C820_002039 (pcrA)
03430 Mismatch repair
C820_002039 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clod03400
]
C820_002039 (pcrA)
Enzymes [BR:
clod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C820_002039 (pcrA)
DNA repair and recombination proteins [BR:
clod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C820_002039 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
C820_002039 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
DEAD
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
USF30597
LinkDB
All DBs
Position
2013291..2015522
Genome browser
AA seq
743 aa
AA seq
DB search
MINFTQLNDMQQKAVLQVDGPVLILAGAGSGKTGALTVRIAHMIEQGIRPWNILAITFTN
KAAKEMRERINNLIGEVANDVWVSTFHSTCVRILRSEIHHMDFDNHFSIYDADDQEKLMR
ECFKKLNISLTDKEYSVRSAIARISKQKEELISWTEYAAKIDKNDFKEVQTAKIYQIYQV
MLKENNALDFDDLIYKTVLLFQQHPEVLEKYQNRFQYIMVDEYQDTNTAQYILIKMLAER
HNNICVVGDDDQSIYGWRGANIRNILDFEKDFVGAKLIKLEQNYRSTKTILEAANSVIHN
NITRKSKSLWTENETGNVIHVYKAENEYDESRFVSEKIEELKRSGKSYNEMAVLYRTNVQ
SRTIEDQLVKKSIPYHLFGGVRFYERKEIKDIICYLKVLSNPSDNIALFRIINVPKRGIG
DTSIEKVNHFAIENNMTFYEALSHLDEIPELKTRAKKFQDFYELIEDLRNEVHQLSVMDL
IDCILKRSGYLQILLNEGTDEALSRIENIDEFINKAAEYEKQNIEGGLSGFLEDIALVAD
IDSYEENDGNVALMTLHTAKGLEFNYVFIIGMEERIFPSYSSVMYGGTKEIEEERRLCYV
GITRAKQELFLSFAKSRMQHGITQYNTPSRFLNEIPEELIEMPVRPISAAAKEYALKTKM
RIKPTFTKPNPYGMVKTKLEIPSPKNIEIDFKEGDKVRAPKYGIGIVKSISSGGADFEVE
VSFGEKGIKKFMAGLSKLKKIEE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgataaattttacacaattaaatgatatgcaacaaaaagctgtgttacaggtagatgga
cctgtattgattttagcaggtgcaggttctggaaaaacaggagcattaactgttcgtatt
gcacatatgattgaacaaggaattcgtccatggaatatacttgctattacatttacaaat
aaagcagcaaaagaaatgagagaaagaattaacaacttgataggagaagttgcaaatgat
gtttgggtgagtacatttcattctacttgtgttagaattttgagaagtgaaattcatcat
atggattttgataatcatttttctatttatgacgctgatgaccaagaaaaattaatgaga
gaatgttttaaaaaattaaatattagtttaacagataaagaatattcagttagaagtgct
atagctcgcattagtaaacaaaaagaggaactaattagctggacagaatatgcagcaaaa
atagacaaaaatgattttaaagaagtacaaactgcaaaaatatatcaaatatatcaagtt
atgttaaaagaaaataatgcacttgattttgatgatttaatttataagacagtactattg
tttcaacaacacccagaagttttagaaaaatatcaaaatcgttttcaatatattatggta
gacgaatatcaagatacaaatactgctcagtatatattaattaaaatgctcgctgaaaga
cataataatatttgtgtagtaggagatgatgaccaaagtatttatggctggcgtggtgct
aatattagaaatatactggattttgaaaaagattttgtaggagcaaagcttattaaatta
gaacaaaattatcgttctacaaaaacaatattagaagctgcaaattctgttattcataat
aacattacaagaaaaagtaaatctctttggacagagaatgaaacaggaaatgttattcac
gtctataaagcagaaaatgaatatgatgaaagtcgttttgtttcagaaaaaatagaagaa
ttaaaaagaagtggaaaaagttataacgaaatggctgttttatatcgtactaatgtacaa
tctcgtacaattgaagaccaacttgtaaaaaaatctataccttatcatctttttggcggt
gttcgtttctatgaaagaaaagaaattaaagatattatttgttatttaaaagtattatct
aatccatcagataatattgcactatttagaattatcaatgttcctaaaagaggcattggt
gatacttctattgaaaaagtaaatcattttgcaatagaaaataatatgacattttatgaa
gcattatcccatttagatgaaataccagaattaaaaacaagagctaaaaaatttcaagac
ttttatgaactaatagaagacttaagaaatgaagtacatcaactttctgtaatggattta
attgattgtattttaaaacgttcaggctatttacaaatactgttaaatgaaggtacagat
gaagcattatcaagaattgaaaatatagacgaatttataaataaagccgctgaatacgaa
aaacaaaatatagagggagggctttcaggatttttggaagatattgcattagtagctgat
attgatagctatgaagaaaatgatggtaatgttgcacttatgacattacatactgctaag
gggttagaatttaattatgtatttataattggtatggaagaaagaatttttcctagttat
agcagtgttatgtatggaggaacaaaagaaatagaagaagaaagacgactatgttatgta
gggattacaagagcaaaacaagaattatttttatcctttgcaaaaagtagaatgcaacat
ggtattacacaatataatacaccatctcgatttttaaatgaaataccagaagaattaatt
gaaatgccagtacgtcctatttctgctgcagcaaaagaatatgctttaaaaacaaaaatg
agaattaagccaacatttacaaagccaaatccttatggtatggtaaaaactaaattagaa
attccttctccaaaaaatattgaaattgattttaaagaaggagataaagtacgtgcacct
aaatatggtattggaattgtaaaatctatttcttctggtggtgctgattttgaagtagaa
gtttcttttggagaaaaaggaattaaaaaatttatggcaggactttctaaattgaaaaaa
attgaagaataa
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