Clostridium sp. MD294: C820_002380
Help
Entry
C820_002380 CDS
T10174
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
clod Clostridium sp. MD294
Brite
KEGG Orthology (KO) [BR:
clod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clod03032
]
C820_002380 (topA)
03400 DNA repair and recombination proteins [BR:
clod03400
]
C820_002380 (topA)
Enzymes [BR:
clod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C820_002380 (topA)
DNA replication proteins [BR:
clod03032
]
Prokaryotic type
DNA Topoisomerases
C820_002380 (topA)
DNA repair and recombination proteins [BR:
clod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C820_002380 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
DUF7573
Zn_ribbon_recom
Zn_ribbon_GRF
zf-FPG_IleRS
Toprim_4
Zn_ribbon_RPB9
SpdB
HypA
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
USF30936
UniProt:
N1ZMY9
LinkDB
All DBs
Position
complement(2398637..2400754)
Genome browser
AA seq
705 aa
AA seq
DB search
MSEKKEVKKPKKTKEDKKHLVIVESPAKAKTIKKFLGNTYKIEASMGHVRDLPKSQLGID
IEHDYEPKYITIRGKGELLSQLRKQAKSADKVYLATDPDREGEAISWHLLHALNLKEKPI
SRITFNEITKNAVKKSISEAREIDMDLVNAQQARRILDRVVGYTISDLLWQKVKGRLSAG
RVQSVALRMICDREEEINSFIPEEYWTITAHLTDEYKNDINAKFYGTEKEKIELHNETET
NSIIEQIKLKEFVVTDVKKGTRIKKPVAPFTTSTLQQEASKHLNMTTQKTMIIAQQLYEG
IDIKGEGTIGIVSYIRTDSFRVSDEAYHQAVQFIDETYGKEYVNPERAVYKSKGKTQDAH
EAIRPTSASRTPESIKESLSKDQYKLYKLIWERFIASQMSPAVYDTLSVKIKCDKYQFRT
GGSVLKFEGFLKVYNYSKEETEKIVNLEQGQILQQKEIEGIQHFTQPPPRFTDASLVKTL
EEIGVGRPSTYAPTLTTIQTRNYVTKENKNLFPTELGEIVNDIMKNYFSDIVDIHFTATM
EDKLDKVEEGKGEWKQIIREFYPPFHKEVLDAAEKLEKIDIKDEVTDIICEKCGRNMVIK
YGRYGKFIACPGFPECHNAKAFYEEAGVSCPECGEKILIKKTKKGRKYFGCENSECNFMS
WNKPTGEKCPRCGSYMEEKGKKNTKIVCSNIQCGYIQQEKKEKAE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaaaaagaagtgaaaaagccaaaaaagacaaaagaagacaaaaaacatctg
gtcattgtagagtcacctgcaaaagcaaaaacaataaaaaaatttttgggaaatacttat
aaaatagaggcatctatgggtcatgtgagagatttacctaaaagtcagcttggaattgat
atagaacatgactatgaaccaaaatatattacaataaggggaaaaggggaattactaagc
cagctaagaaaacaggcaaaatcagcagataaggtctatttagcaacagaccctgataga
gaaggagaagcgattagttggcatttacttcatgctttaaatttaaaagaaaaaccaatt
agtcgtattacatttaatgaaattacaaaaaatgcagtaaaaaaatccatttcagaagcg
agagagattgatatggatttagtcaatgcacaacaggcaagaagaattcttgacagagta
gtaggatatactataagtgatttgctttggcaaaaagtaaaaggcagattaagtgctggt
cgtgtacaatctgttgctttaagaatgatttgtgacagagaagaagaaataaatagtttt
ataccagaagaatattggacaattacagcacatttgacagatgagtataaaaatgatata
aatgctaaattttatggtacagaaaaagaaaaaatagaattacacaatgaaacagaaaca
aatagcattatagaacaaataaaattaaaagagtttgttgtaacagatgtcaaaaagggt
acaagaataaaaaaacctgttgcaccttttacaacaagtacattgcagcaagaagcaagc
aaacatttgaatatgacaacacaaaaaacaatgattatagcacaacagctatatgaaggt
attgatataaaaggagaaggaacaatcggtattgtttcttatattagaacagactctttt
cgtgtttctgatgaagcatatcatcaggcagtacagtttattgatgaaacttatggtaaa
gaatatgtaaatcctgaaagagcagtatataaatcaaaaggaaaaacacaagatgctcat
gaagcaattagaccgacaagtgcttctcgtacaccagaaagtattaaagagtctttgtca
aaagaccaatataagctatataaattgatttgggaaagatttattgctagtcaaatgagt
cctgctgtatatgatacattatctgtgaaaataaaatgtgataaatatcaatttagaaca
ggtggttctgtattaaaatttgaaggatttttaaaagtttataattatagtaaagaagaa
acagaaaaaattgtaaatttagaacaagggcaaatattgcagcaaaaagagatagaaggt
atacaacattttacacaaccccctccacgatttacagatgcttctcttgtaaagacatta
gaagagattggtgtagggcgtcctagtacgtatgctcctacattgacaacaatacaaaca
agaaattatgtaacaaaagaaaataaaaatctttttccaacagaactaggtgaaattgta
aatgatattatgaaaaattatttttctgatattgttgatattcattttactgcaacaatg
gaggataaattagataaagtggaagaaggaaaaggagaatggaaacagattataagagag
ttttaccctccttttcataaagaagtgttagatgcagcagaaaagttagaaaaaatagat
attaaagatgaagtaacagatattatatgtgaaaaatgtggtagaaatatggtaataaaa
tatggccgttatgggaaatttattgcttgtcctggtttcccagaatgtcataatgcaaag
gcattttatgaagaggctggtgtgtcctgtccagaatgtggcgaaaaaatactcataaaa
aagaccaaaaaaggtagaaaatatttcggctgtgaaaattcagaatgtaattttatgtca
tggaataaaccaacaggagaaaaatgtcctcgttgtggtagctatatggaagagaaagga
aagaaaaatactaaaattgtttgttcaaatatacaatgtggctatatacaacaagagaaa
aaagaaaaagcagaataa
DBGET
integrated database retrieval system
