Clostridium sp. LQ25: ONV75_03165
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Entry
ONV75_03165 CDS
T10526
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
clol Clostridium sp. LQ25
Pathway
clol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ONV75_03165 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clol03019
]
ONV75_03165 (rnr)
03016 Transfer RNA biogenesis [BR:
clol03016
]
ONV75_03165 (rnr)
Enzymes [BR:
clol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ONV75_03165 (rnr)
Messenger RNA biogenesis [BR:
clol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ONV75_03165 (rnr)
Transfer RNA biogenesis [BR:
clol03016
]
Prokaryotic type
tRNA degradation factors
ONV75_03165 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
OB_HELZ2
Disaggr_assoc
Symplekin_C
S1_RRP5
DUF5771
Motif
Other DBs
NCBI-ProteinID:
UZT06875
LinkDB
All DBs
Position
1:647684..649888
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AA seq
734 aa
AA seq
DB search
MGIKQTLVSFMKEPAYSPMALEDLVAVFDIKPNEYSAFKKTLRVMEREGLIMRTKKDRFI
IADGNNNHIETKENLVIGTLQAHAKGFGFLIPEDENEKDVFLPSNCMNGAINGDKIAVKV
TREDTNTKKREGEVVEILERNTTTVVGIYEDSKSFGFVISEDTRISRDIYIPKRDRNGAQ
DGDVVTVKITKWPEGNRKPEGVVTEVLGRKGDRGIDILIVIKKLGLPEEFNSKVLKYAEG
ISEEIDESEYKGRRDLRDVRMVTIDGEDAKDLDDAVSIEKLPNGNYKLGVHIADVSHYVR
ENNPLDKEAFKRATSVYLIDRVIPMLPRKLSNGICSLNPKVDRLTLSCIMEIDHKGKVVN
HEIVESVIRTNERMTYTDVTKILEDNDEELIKRYDYLVDDFKTMKELCKILRAKRTKRGA
IDFEIAEAKIILNELGKPIEIKPYDRAISNRMIEEFMLVANETVAEHMFWTHLPFVYRIH
ENPDDEKLTKFKEFIHNLGYNINWTEEIRPKTLQDIIEKVKGKSEETVVNTLLLRSMMQA
RYAPECTGHFGLAAQYYCHFTSPIRRYPDLQIHRIIKEYLHGKIDEKRENKLKNIVGHSA
KQSSEMERKAQDAEREVDDLKKAEYMQDRIGEEFEGVISSVTSFGVFVELPSTIEGLVHI
TDLDDDYYIYEEDHLRLIGERTKKIYKLGDKVLVECVHVDMPNKEIFFKIIEEPNEEEVS
VEEPKNNESEIEIK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgggaataaaacagacattagtaagttttatgaaagaacctgcatatagccctatggca
cttgaagatttagttgctgtatttgatataaaacctaatgagtatagtgcatttaaaaaa
acattaagagttatggaacgtgaaggtctcatcatgagaactaaaaaggatagatttata
attgctgatggtaataataatcatattgaaacaaaagaaaatttagttataggaacatta
caagctcatgcaaaaggatttggatttttaattcctgaagatgaaaatgaaaaggatgta
tttttaccaagtaattgtatgaatggagctattaatggagataaaatcgctgttaaggtt
acaagagaagatacaaatacaaaaaaaagagaaggcgaagtcgtagaaatacttgaaaga
aacacaacaactgtagttggaatttatgaagattctaaaagttttggatttgttatatca
gaagatacaagaatatcaagagatatttatattcctaaaagagatagaaatggtgcacaa
gatggtgatgttgttacggtaaaaataacaaaatggccagaaggaaatagaaaaccagag
ggtgttgtaacagaagtattaggaagaaaaggtgatagaggaatagacatccttatagta
attaaaaaattaggacttcctgaagaatttaatagtaaagtattaaaatatgcagagggt
atttccgaggaaattgacgaaagtgaatataaaggtagaagagatttaagagatgtaaga
atggtaacaatagatggtgaagacgctaaggatttagatgatgctgtatctatagaaaaa
ctacctaatggaaattataaattaggagttcacattgcggacgtttctcactatgtacgt
gaaaataatcctcttgataaagaagcatttaaaagagcaacttcagtatatttaatagac
agggttattccaatgcttcctagaaaattatctaatggaatatgttcattaaatcctaaa
gttgatagactaactttatcatgtataatggaaatagatcataaaggaaaagttgttaat
catgaaatagttgaatctgtaataagaactaatgaaagaatgacatatacagatgtaact
aagattttagaagataatgatgaagagttaattaagagatacgattatcttgttgatgac
tttaaaacaatgaaagagctttgtaaaatattaagagcaaagagaaccaaaaggggagct
attgattttgaaatagctgaagctaaaataatattaaatgaacttggaaaaccaatagaa
ataaagccttatgatagagctatatctaatagaatgattgaagaatttatgcttgtagca
aatgaaactgtggcagagcatatgttctggacacatttaccttttgtatatagaattcat
gaaaatcctgatgatgaaaaattaactaagttcaaagaatttattcataatttaggatac
aatattaattggactgaagaaataagaccgaagacacttcaagatataatagaaaaggta
aagggtaagagtgaagaaacagtagtaaatactttattattacgttcaatgatgcaagca
aggtatgcaccagaatgtactggtcactttggattagcagcacaatattattgtcacttt
acttcgccaataagaagatatcctgatttacaaattcacagaataattaaagaatatctt
catggaaaaatagatgaaaagagagaaaataaattaaagaatattgttggtcactcagca
aaacagtcatcagaaatggaaagaaaagctcaagatgcagaaagagaagttgatgattta
aagaaagctgaatatatgcaggatagaattggagaagaatttgaaggtgttatttcttct
gtaacatcatttggagtctttgtggaacttccaagtacaatagaaggtttagttcatatt
acagatttagatgatgattactatatttatgaagaagatcatttaagattaatcggtgag
agaactaagaaaatctataaacttggagataaagtacttgtagagtgtgttcatgttgat
atgccaaataaagaaatattctttaagattattgaagaaccaaatgaagaagaagtttca
gtagaagaacctaaaaataatgagagcgaaattgaaattaaatga
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