Clostridium sp. MF28: AXY43_01880
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Entry
AXY43_01880 CDS
T11014
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clom Clostridium sp. MF28
Pathway
clom03018
RNA degradation
Brite
Enzymes [BR:
clom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXY43_01880
Messenger RNA biogenesis [BR:
clom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXY43_01880
Ribosome biogenesis [BR:
clom03009
]
Prokaryotic type
rRNA helicases
AXY43_01880
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AVK46871
LinkDB
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Position
complement(460123..461568)
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AA seq
481 aa
AA seq
DB search
MIKANFNDYKLSSELLKAISMLNFKELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAI
PICQLVDWEENKPQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSPFYDQEKELK
QKTHIVVGTPGRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVT
MLLSATMPKDIETLCNKYMKDPIHIEIEEQNKAADNICQERYNVNELNKIDLLRDITILE
NPDSCMIFCNTKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYLIATD
VAARGIDIDNITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLNDIHEY
IGKEIPLKERPKVETVNNLKEEFALKMNTRPEIKETKGAKLSKEIMKLHINAGKKTKMRA
VDIVGTLCNIEGMTKDDIGIINIFDISTFVEILNNKGEWVFQQLQKTPIKGRLRTVSKVD
I
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagcaaattttaatgattataagttaagcagtgagttattaaaagcaattagc
atgttaaacttcaaggagttaacaaaagttcaggaacaggttataccgattgcgttagaa
gaaaaggatatagtagtaaagtctaaaactggaagtggtaagactgcatcatatgctatt
cctatttgccaattagtggattgggaagaaaataaacctcaagcattagtgattacacca
acaagagaacttgctatccaagtcaaagaggatttttttaatataggtagatttaaaaga
attaaagcagctgcaatttatgggaagtcacctttctatgatcaagaaaaggaacttaag
caaaagacacatatagtagttgggacacctggtcgtattatagatcatatagaaaaaggt
acatttgatctatcaaagataaagtatcttataatagatgaagctgatgaaatgcttaat
atgggatttgtagagcaaatagaaacaataataaaaagcttatcaaaagaacgtgtgacc
atgttattgtcagccacaatgccaaaagacatagagactttatgtaataaatatatgaaa
gatcctatacatattgaaatagaggagcaaaacaaagctgcagataatatatgtcaagaa
agatataacgtaaatgaattgaataaaatagatctcttaagagatataactatattagaa
aatccagatagttgtatgatattctgcaatacaaaacaaaaggtagatgaagtttataaa
gaattggcaaagctccagtatgattgcagaaaaatacatggtggaatggaacaaagtgat
agattaagagtaatgaataattttaagctgggttattttagatatttaatagccacagat
gttgcagctagagggatagatatagataatatcacccatgtaattaattatgatatacca
gaagacaaggaaagttatgtacataggataggaagaactggacgtgcaggcaagatgggt
agagcaattacttttgtaacacaaaatgaaagtaagtttttaaatgatatacatgaatat
attggtaaagaaattcctttgaaggaaagacctaaagtggaaactgtaaataatcttaaa
gaagaatttgctttgaaaatgaacacaagacctgaaattaaagaaacaaaaggtgcgaag
ctaagtaaagagattatgaaattacatattaatgcaggtaagaaaacaaagatgagggcg
gtagatattgtaggcacgctttgtaatattgaaggcatgacaaaagacgatataggaata
atcaatatatttgatatatctacctttgtagaaatattaaataataaaggagagtgggtg
ttccagcagttacaaaaaacacctatcaaaggcaggcttcgtaccgtaagtaaagttgat
atataa
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