Clostridium sp. MF28: AXY43_02625
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Entry
AXY43_02625 CDS
T11014
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clom Clostridium sp. MF28
Pathway
clom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXY43_02625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clom03019
]
AXY43_02625
03009 Ribosome biogenesis [BR:
clom03009
]
AXY43_02625
Enzymes [BR:
clom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXY43_02625
Messenger RNA biogenesis [BR:
clom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXY43_02625
Ribosome biogenesis [BR:
clom03009
]
Prokaryotic type
rRNA helicases
AXY43_02625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Ferritin_2
Motif
Other DBs
NCBI-ProteinID:
AVK46999
LinkDB
All DBs
Position
complement(658297..659871)
Genome browser
AA seq
524 aa
AA seq
DB search
MGNKVFSELGLDESILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGA
PILSRIGKQDGKVNSIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALR
RGIDIVVGTPGRVLDLIRRKVLNLSSIRFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQT
MLFSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDV
DEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGNLEFLIAT
DVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEK
VTKSKIRRREIPTVDEIFVSKYKNMFSKIKETLEQDSYKKFIPMATELDEEFNLVEVAAA
LMDMVYSKEVNYDYTENEIGSKTDYKRLFLNVGRLDKINPRKLVDFFNENAKVKREDVGD
IDILEKFSFVNVTEAAAESIMKHCTGKKFAGRKLNVEISTKSKR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgggaaataaggtatttagtgaattaggtcttgatgagagtattcttaaggccattgat
gcaatgggatttgaagaaccttctaagattcaagctgaggtaataccagttcttttagaa
ggtcatgatgttattgggcaggcacaaacaggaacaggaaagacactggcatttggtgca
ccaatattaagcagaattggaaagcaagatggtaaggtaaatagtataatactaacgcct
acaagagaacttgctatacaggtaaatgatgaattgaatcgtatagctaaatttactaag
attaagttgcttcctgtatacggtggtcaacctattgacaggcagatttcagctttacgt
agagggatagatatagtagtaggaactccaggtagagtgttggatttaataagaagaaaa
gttttaaatttgagctctattagatttcttgtattagatgaagccgatgaaatgttaaac
atgggatttattgatgatatagaagaaataataaaaaattcaaatcaagacagacagaca
atgttgttttcagctactatgcctgaagaaatcaaaagacttgctaaaagatatatgaag
tctgaaacgaaacacatagccattttaaaaaatgcaatgactgtagctacagtggatcaa
tactattatgaaattaaaaacaaggatagatttgaaacactatgtaggatacttgatgtt
gatgaacctacatctgcaataatcttttgtaagaccaaaaggaacgttgatgaacttgtt
gaaggtcttcagggaagagggtatactgctgaaggaatgcatggagatatgaatcaaaat
cagagaataaataccttaagaaaatttaaagaaggaaatttagaattcctgatagcaact
gatgttgctgcaagaggcatagatgttgaaaatgtaacgcacgtaataaattacgatttg
cctcaggacgtagaatcctatgttcacagaataggcagaacaggtagagcaaatagaaaa
ggtgttgcttacacattggttactgcaagagaatatatgtctcttaaacatattgaaaag
gttacaaaaagcaagataagaagaagagaaattcctactgttgatgaaatatttgtttca
aagtacaaaaatatgttttcaaagataaaggaaactttggagcaggatagctataagaaa
tttataccaatggcaacagaacttgatgaagagtttaacctcgtagaagtagcagcggca
ttaatggatatggtatatagtaaagaagtgaactatgactatactgaaaatgaaataggt
tcaaagacagattacaagagactgtttttgaatgtaggacgcttggataagattaatcca
aggaagctagtggatttctttaatgagaatgcaaaggtaaaaagagaagatgtcggagat
attgatattcttgaaaagttttcatttgtaaatgtaacagaggctgcagcggaatccata
atgaagcattgcactggaaagaaatttgctggaagaaagctaaatgtcgaaatttcaaca
aaatcaaaaagataa
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