KEGG   Clostridium sp. MF28: AXY43_09510
Entry
AXY43_09510       CDS       T11014                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K02405  RNA polymerase sigma factor FliA
Organism
clom  Clostridium sp. MF28
Pathway
clom02020  Two-component system
clom02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:clom00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AXY43_09510
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AXY43_09510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clom03021]
    AXY43_09510
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:clom02035]
    AXY43_09510
Transcription machinery [BR:clom03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AXY43_09510
Bacterial motility proteins [BR:clom02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    AXY43_09510
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 HTH_23 Sigma70_ECF UPF0122 HTH_3
Other DBs
NCBI-ProteinID: AVK48247
LinkDB
Position
complement(2201996..2202724)
AA seq 242 aa
MHALKDVDGKEQIIQEYIPLVKYIASRVMFGKNKYMEYEDLVSYGMVGLMDALNKFDNTK
GMKFSSYASIRIKGAMIDELRKNRPISKGAMDKLNRYNKAIDTLQLELLREPTNDEIAKY
LGISISEVGEIENYINYISMVSLENVIFSDDEDVNLIGIIEDKNSPSPDAHLQDKEQLEI
LTKAIDLLKEKDRIVLNLYYYEGLTLKEIGTVLSVSESRVCQLHSRAISSLRECMRKLHY
ID
NT seq 729 nt   +upstreamnt  +downstreamnt
atgcacgcattaaaagacgttgatggaaaagagcagatcatacaagaatatatcccgtta
gtaaagtatattgcctcgagggttatgtttggaaagaacaaatacatggaatatgaggac
ttagttagttatggtatggttgggcttatggatgcgttaaataagtttgacaatacgaaa
ggaatgaaattttcatcatatgcgtctataagaataaaaggtgctatgatagatgagctg
aggaaaaatagacctatatctaaaggggcaatggacaaactaaatagatacaataaagcg
atagacacattgcagttagaactattaagggaacctactaatgatgagattgcaaaatat
cttgggatatctataagtgaagtaggagaaattgaaaattacataaattatatttcaatg
gtatcactggaaaatgtaattttttcggatgatgaggatgtaaaccttattggaattata
gaagataaaaatagtccaagtcctgatgctcacttacaagataaggagcaactagagatt
ttaacaaaggcaattgatctccttaaagaaaaagatagaatagtattaaatctttattat
tatgagggattaactttaaaagagataggaacagtattaagcgtttccgaatctagagtt
tgccaattacatagtagagctattagtagcttgagagagtgcatgagaaaattgcattat
attgattaa

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