Clostridium sp. MF28: AXY43_09825
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Entry
AXY43_09825 CDS
T11014
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
clom Clostridium sp. MF28
Pathway
clom03410
Base excision repair
clom03430
Mismatch repair
clom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AXY43_09825
03430 Mismatch repair
AXY43_09825
03440 Homologous recombination
AXY43_09825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clom03400
]
AXY43_09825
DNA repair and recombination proteins [BR:
clom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AXY43_09825
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AXY43_09825
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXY43_09825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ADH_zinc_N
Motif
Other DBs
NCBI-ProteinID:
AVK48305
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Position
complement(2269605..2271371)
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AA seq
588 aa
AA seq
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MAERWFIKNIKADYKYISKKYALSELVSRLIVNRNIISDEMIRSYINPDFDKFHEAREMK
DLEKSVDILSEKIKAQNKIRIVGDYDVDGVISIYILYSALKRCNANVDYEIPDRIKDGYG
INMNIIKQAKEDGVDTILTCDNGISAIDQIKYAKELGITVIVTDHHDIPFVEKENNVREF
ISLSADAVVNPKQSECNYKFKQLCGAGVAFKLVEILYETFNIDKKECYKFIEFLAIATVC
DVVDLVDENRIFVKKGLELINSTTNLGLQELIRECELTEKTLSVYHLGFIIGPCINASGR
LDSAKRGLELLLSYDEEEAVRLAKELVKLNEDRKDMTMKGVETAVEIIEKSGMINDKVFV
IYIPDIHESLAGIIAGRIKEKYNVPTLVITKAEHGVKGSGRSIEEYNMFEELIKCKDLLE
KFGGHPMAAGFSLKEENIDEFRRRLNENTILKDEDLLRKVTIDSVLPLDAISYDVINDLE
RLEPFGKSNSKPLFAEKNINLLKATILGKNRNVLKLKLKTRMNKALDAIYFGDIEKFEEE
VSSKYGNEELQKLYNGEYNHVNLDLVFYPNVNEYNGNTTIQIVIQNYR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaagatggtttataaaaaatataaaagctgattataaatacatatctaaaaaa
tatgcactttcagaattggttagtaggcttatagtaaacaggaatattataagcgatgaa
atgataagaagttatattaatccggattttgataaatttcatgaggccagagagatgaaa
gatttagaaaaatcagttgatatactgagtgagaaaataaaagctcagaataagatacga
attgttggagattacgatgttgatggtgtaataagtatttatattttatactcagcttta
aaaaggtgcaatgcaaatgtagattatgaaattccagatagaataaaagatggatatgga
attaatatgaatattataaagcaggcgaaagaagatggggttgataccatactaacttgc
gataatggtatatcggctatagaccaaataaaatacgcaaaagaattaggaattacagta
atagttacagatcatcatgatataccatttgttgagaaagaaaataacgtcagagaattt
ataagtttaagtgctgatgctgtagtaaatccaaagcaaagtgaatgcaattataaattt
aaacaattgtgtggagcgggtgtagcatttaagcttgtagaaattctttatgagactttt
aatatagataaaaaagaatgctacaaattcatagaatttttggcaatagcgacagtttgc
gatgttgtagatttagttgatgagaataggatatttgttaaaaagggattagaacttatt
aacagtacaactaacttaggactacaagaattaataagagaatgcgaattaacagaaaaa
actttatcggtatatcatcttggatttattatagggccatgcataaatgcttcaggaagg
ctagattcggccaaaagaggattggaattattgctctcatatgatgaagaggaggcagta
aggctcgcaaaagaattagttaaattaaatgaagatagaaaagatatgaccatgaagggc
gtcgaaactgctgttgaaattatagagaaaagtggaatgataaatgataaagtatttgtt
atctatattcctgatatacatgaaagtttagcaggtataatagcaggaagaataaaagaa
aaatataatgttccaactttggttataacaaaagcagaacatggtgtgaagggttcagga
agatcaatagaagaatacaatatgtttgaagaacttattaagtgcaaggatctgcttgaa
aagtttggtgggcaccctatggctgcaggtttttcattaaaagaagaaaatatagatgaa
tttaggcgaagattaaatgaaaatacaattttaaaagacgaggatttattgagaaaagtt
actatagactcggttttgccgcttgatgctataagctatgatgtgataaatgatttagaa
agattagagccttttggtaaatcaaactctaaaccattgtttgctgagaaaaatattaat
ttattaaaggcaacaatacttgggaagaataggaatgtgctaaaattaaaactcaagacc
aggatgaataaagctctggatgccatttattttggcgatattgaaaagtttgaagaagaa
gttagcagtaaatatggaaatgaagaattgcaaaaactctataatggagaatataatcat
gtgaaccttgatttagtattttatccaaatgttaatgaatataatggtaatactactata
caaatagtaatacaaaattataggtaa
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