Clostridium sp. MF28: AXY43_12390
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Entry
AXY43_12390 CDS
T11014
Name
(GenBank) ABC-ATPase UvrA
KO
K03701
excinuclease ABC subunit A
Organism
clom Clostridium sp. MF28
Pathway
clom03420
Nucleotide excision repair
Brite
DNA repair and recombination proteins [BR:
clom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXY43_12390
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AXY43_12390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_21
RsgA_GTPase
nSTAND1
AAA_33
AAA_22
AAA_25
ATPase
AAA_18
nSTAND3
APS_kinase
AAA_15
DnaJ_CXXCXGXG
SLFN-g3_helicase
cobW
Viral_helicase1
DUF4350
NMDAR2_C
Septin
T2SSE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AVK48784
LinkDB
All DBs
Position
complement(2969494..2972319)
Genome browser
AA seq
941 aa
AA seq
DB search
MNDKIVIKGAKVNNLKNVSLEIPRDKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSS
YARQFLGQMDKPNVEYIEGLSPAISIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIPH
CPKCGKEITKQSVDQIVDKIMGYGDRSKLQVLSPVVKGRKGTHEKILEHIKKSGFVRARI
DGEIYDLTEEEVKLDKNKKHNIEAVIDRIVIKEGIEGRLTESVEASLKMGEGLVIISVIG
GEETLFSENFACPDCGISIDELSPRLFSFNAPYGKCDHCDGLGSLMEIDEKLVIPNRELS
VMEGAIASWGSGRLKEDSWTYAILQALTKEYGLDLSKPIKDLDKEHVDLLLYGTGGKKLK
IEYVKDGVKAIYSYAFEGEINALSRRYRESNSDLIKGEIEQYMSNDSCPKCKGARLKKEV
LAVTVGGKNIYEFTSMSIKEELEFINGVEFSEKNKLISEQIIKEIKNRLQFLLDVGLDYL
SLSRNSGTLSGGESQRIRLATQIGSALMGVLYILDEPSIGLHQRDNDRLIHTLKNLRDVG
NTVVVVEHDEDTMKEADYIVDIGPGAGEHGGEVVVAGTLDEVKACEKSITGQYLTGRKSI
QIPAARRKGNGQKIKIVGAKENNLKNINVSIPLGTLTMVTGVSGSGKSTLVNEILYKGLN
RLVNKSKNPVGNHKEIVGYENIDKIIDINQSPIGRTPRSNPATYTGTFDIIRELFSQTTE
AKMRGYKQGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKY
KGKNIDDVLKMTVEEALKFFENIPRIENKLRTLNDVGLGYIRLGQPSTQLSGGEAQRIKL
AYELSKRSTGKTLYILDEPTTGLHVDDVSRLIEILQSLVATGNTVVVIEHNLDMIKCADY
LIDLGPEGGDKGGTIIKCGTPEELCKVQESYTGKYLKDVLK
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataagatagtaataaaaggtgcgaaagttaataatttaaagaatgtaagttta
gaaataccgagagataaattagttgtacttacaggattatcaggctcaggtaagtcatca
ttggcatttgatacattatatgctgaagggcaaagaagatatgtggaatctttatcttct
tatgcacggcaatttttaggacaaatggataaaccgaatgtagaatatatagaaggatta
tcaccggcaatatcaatagatcaaaagactacaagtaaaaatccaagatcaacagttgga
acaataactgaaatatatgattatttgagattattatatgcaagagtaggaattcctcac
tgtccaaagtgcggtaaagaaattactaaacaatctgttgatcagattgttgataaaatt
atgggttatggagatagatctaaacttcaagtattatcacctgtagttaaagggagaaaa
ggaactcatgaaaagatattagaacatataaagaagagcggctttgttagagcaaggatt
gatggggaaatttatgacttaactgaagaggaagtaaagttagataaaaataaaaagcat
aatattgaagctgttattgatagaattgttataaaggaagggattgaaggtagacttaca
gaatctgtagaagcgtctttaaagatgggcgaaggattagtcataattagcgttattgga
ggagaagaaactttatttagcgaaaattttgcttgcccagattgtggaataagtattgat
gagctatcgcctagattattttcatttaatgctccatatggaaagtgcgatcattgtgat
gggcttggaagtcttatggagatagacgaaaagcttgttatacctaatagagagctaagt
gttatggaaggagctatagcaagctggggaagtggaagactaaaagaagattcttggaca
tatgcaatacttcaagctctaactaaagagtatggattagatttaagcaagcctataaaa
gatttggataaagaacatgttgatttattgttgtatggaacaggtggaaaaaaacttaaa
attgaatatgtgaaagatggagttaaagctatttatagttatgcatttgagggggaaatt
aatgcattaagcagaaggtatagagagagtaattcagatcttataaagggtgaaatagag
caatacatgagcaatgattcatgcccaaaatgtaaaggcgctagattgaaaaaagaagtg
ctagcagttactgttggtggaaaaaatatatatgaatttacaagtatgtcaataaaagaa
gaacttgagtttataaatggagtggaattttcagaaaaaaataaacttataagtgagcag
attataaaagaaattaaaaatagattgcagtttttgctagatgttggtttagattactta
agtttatcaagaaattctggaaccttatcaggtggggaatcacaaagaataaggcttgca
acacaaattggttcagcacttatgggagttctatatatattagatgaaccaagtattgga
ttgcatcaaagggataatgataggctaatacatactttgaaaaatctaagagatgttgga
aatacagtagtagttgtagaacacgatgaagatactatgaaggaagcagattatattgtt
gatattggaccgggtgcaggagagcacggaggagaagtagttgttgctggaacacttgat
gaagttaaggcatgtgaaaaatcaataacaggtcaatatttaactggaagaaaatcaatt
caaattccggcagcgagaaggaaaggtaatggacaaaaaataaaaattgtaggcgctaaa
gaaaataatttaaaaaatataaatgtttcaattcctcttggtactttaactatggtcaca
ggagtttctgggtccggaaaaagtactctggtaaatgaaatactttataaagggttaaat
agattagtaaataagagcaaaaatccagtaggaaaccataaagaaatagttggttatgaa
aatattgataaaataatagatataaatcaaagtccgattggaagaacacctcgttctaat
ccggcaacttatacaggcacatttgatataattagagagttattttcacaaactacggaa
gctaaaatgaggggttataagcaaggtagatttagttttaatgttaaaggtggaagatgt
gaagcttgttctggagatggaataataaaaatagaaatgcaatttctatcggatgtttat
gttccatgtgaggtgtgtaaaggaaagaggtataatagagaaactttagaagtaaagtat
aaagggaaaaatatagatgatgtattaaaaatgacagttgaagaagcgttgaagttcttt
gaaaatatacctagaattgagaataagttgaggacattaaatgatgtaggacttggatat
attagattaggtcagccttcaactcaattatcaggaggagaagctcaaagaattaagtta
gcatatgaattatcaaagagaagcacaggaaaaactctatatatattggatgagccaaca
acaggattacacgtagatgatgttagtagattaatagaaatacttcaaagtttagttgca
acaggaaatactgtagtagtaattgagcataatttagatatgataaaatgtgcagattat
ttgattgatttaggtccagaaggcggagataagggtggaaccattataaaatgtggaact
ccagaagaattatgtaaggttcaagaatcttatacaggtaaatatttgaaagatgtgctt
aaataa
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