Clostridium sp. MF28: AXY43_12490
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Entry
AXY43_12490 CDS
T11014
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
clom Clostridium sp. MF28
Pathway
clom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AXY43_12490
09124 Replication and repair
03420 Nucleotide excision repair
AXY43_12490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clom03021
]
AXY43_12490
03036 Chromosome and associated proteins [BR:
clom03036
]
AXY43_12490
03400 DNA repair and recombination proteins [BR:
clom03400
]
AXY43_12490
Enzymes [BR:
clom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
AXY43_12490
Transcription machinery [BR:
clom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AXY43_12490
Chromosome and associated proteins [BR:
clom03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
AXY43_12490
DNA repair and recombination proteins [BR:
clom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AXY43_12490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
ResIII
PhoH
IMS_C
Motif
Other DBs
NCBI-ProteinID:
AVK48803
LinkDB
All DBs
Position
complement(2991769..2994054)
Genome browser
AA seq
761 aa
AA seq
DB search
MDKILIRESVRNLVEFCLKKGDIDNRFSGSARAVEGVRAHQKLQEDNGRIYENYEKEVYL
THEFETNKSLIYIEGRADGIITERDKVIIEEIKSTYKNFAYIDDLNEVHWAQAKVYAFIY
GNQNNLEEIYVRLSYMQLETNEVKSFEKRFTIGELEEFISDLLREYERFSVLIFKWKNIR
DETIKVLNFPFEKYREGQRKLINVSYQTIKEGEILFVQAPTGIGKTISTIFPAVKAISEG
IGEKIIYLTAKTINREVAEETFERLRQEGLKFRTITITAKEKTCINDDFDCNPEKCIYAK
DYYGKVKKVITNVIEREERISTEILKEYAEKYQVCPFELSLDISTYCDGIIGDYNYIFDP
RVSLSRVLESKGNIVLVDEAHNLIDRSRNMYSASLYKSQILNCKKITKGKLNKLHSLLGK
INDYFIDLRNECDHREVKSFYEEEHPKELSKYLQLYLKESEEVLVRGNRFDGYEDILKLY
FDINAFTSTTQLYDENYRTCIEKDSQEIKLTLYCVNPAKNLREYLGKCYSVIFFSATISP
IKYYVNMLGGDDNTYRLKLPSPFNKENLKVHISPINIRYSYRKRTLSSVKDKICGFIKQQ
IGNYMIFSPSYAYMEELYSHMEEPKLEEFNLMKQKPNMTEEEKSEFLRRFKNSNNLLMFC
VLGGMFSEGIDLPGDQLIGSIIIGVGYPMVDMTNEVIKDFYKEDGYDYAYVFPGINKIQQ
AVGRVIRTETDKGRVLLIDDRYINNKYSVLLPNEWYPINKY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattcttatacgagagtctgtgagaaatttagtagaattttgcttgaaaaaa
ggtgatatagataataggttttctggaagtgctagggcagtagagggagtaagagcacat
caaaagcttcaggaagataacggaaggatttatgagaactatgaaaaggaagtatattta
actcatgagtttgagacgaataaaagcttgatctatattgaaggaagagcagatggaatt
ataacggaaagagataaagttataattgaagaaataaaatcaacttataagaattttgca
tacattgatgatttgaatgaggtacattgggctcaggcaaaggtgtatgcttttatttat
ggaaatcaaaataatcttgaagaaatttatgtgcgattatcctacatgcagttagaaacg
aatgaggttaagagttttgaaaaaagatttactataggagaattagaagaatttatatct
gatttattaagagaatatgagagatttagtgttttaatatttaaatggaaaaacattaga
gatgaaactataaaagtactaaattttccttttgaaaaatacagagaaggtcaaaggaaa
cttattaatgtttcatatcaaactataaaagagggggaaatattatttgttcaggcaccg
acaggcataggaaaaactatatcaaccatattcccagctgtaaaggctataagcgaagga
attggagaaaaaattatatatttgacggcaaagacgataaatagggaagttgcagaagaa
acttttgaaagattgcgtcaagaaggattgaaatttaggactatcacaattacggcaaaa
gagaaaacatgtattaatgatgattttgattgcaatccagagaagtgcatatatgccaaa
gactattatggtaaagtaaaaaaagtaattacaaatgttatcgaaagggaagaaagaatt
tccacggaaatattgaaggaatatgccgaaaaatatcaagtatgcccatttgagctatct
ttagatataagtacttattgtgatggaattataggtgattataattacatctttgatcca
agagtatctttgagtagagttctagaaagcaaaggaaatatagttttggtggatgaagca
cataatttaattgataggtcaagaaatatgtattccgcatccttatataaaagtcaaatt
ctaaattgcaaaaagataactaagggtaaactaaataaactacattccttattgggaaag
attaatgattatttcattgatttaagaaatgaatgcgaccatagagaagtgaaatcattt
tatgaagaggaacatcctaaggaattgagtaagtatttgcagttatacttaaaagaaagt
gaagaagtgctagtaagaggaaatagatttgatggttatgaagatatattgaaattatat
tttgatataaatgcttttacttctacgacacagctctatgatgaaaattataggacttgt
atagaaaaggattctcaagaaatcaagttgactttatattgtgtaaatccagctaagaat
ttaagagaatacttaggaaaatgctactcggtaatatttttttctgcaactatatcacca
ataaaatactatgtaaatatgctgggcggagatgataatacatataggttaaagcttcca
tctcctttcaataaagaaaacttaaaagttcatattagtcctattaatattagatattca
tatagaaaaaggaccttatcatcagtgaaagataaaatttgtggctttataaagcagcaa
attggaaactacatgattttttcaccatcatatgcatatatggaagagttatatagccat
atggaggagccgaagctagaagaatttaatcttatgaaacagaaacctaatatgacggag
gaagaaaaaagtgaatttttaagaagatttaagaatagcaataatttattaatgttttgt
gtgcttggagggatgttttcagaaggaatagatttgcctggtgatcagttaattggaagc
ataataattggagtaggatatcctatggtagatatgacaaatgaagttataaaggatttt
tataaagaagatggttatgactatgcgtatgtatttccaggaataaataaaattcagcag
gctgtaggaagagttataagaactgagacggacaaaggaagagttctgcttattgatgat
agatatataaataataaatatagtgttcttttaccaaatgagtggtatcctataaataaa
tattaa
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