Clostridium sp. MF28: AXY43_14160
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Entry
AXY43_14160 CDS
T11014
Symbol
gyrB
Name
(GenBank) DNA topoisomerase IV subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
clom Clostridium sp. MF28
Brite
KEGG Orthology (KO) [BR:
clom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clom03032
]
AXY43_14160 (gyrB)
03400 DNA repair and recombination proteins [BR:
clom03400
]
AXY43_14160 (gyrB)
Enzymes [BR:
clom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AXY43_14160 (gyrB)
DNA replication proteins [BR:
clom03032
]
Prokaryotic type
DNA Topoisomerases
AXY43_14160 (gyrB)
DNA repair and recombination proteins [BR:
clom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AXY43_14160 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
GyrB_hook
Motif
Other DBs
NCBI-ProteinID:
AVK49065
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All DBs
Position
3344934..3346841
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AA seq
635 aa
AA seq
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MEQNNKKYDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCNK
IEVYINEDNSITVNDDGRGMPVGIHPKMGKSTVEVIMTILHAGGKFGGGGYKVSGGLHGV
GASVVNALSEECTVTVKRDGHIWQQNYSKGKVLNELSKIGDSDQTGTQTYFKPDTEIFDE
IVFDFEVLSQRLRELAFLNKGIYIKLVDKRDEKEEVFHYEGGIKSFVSYLNRNKVPLHEE
PIYIEGVKDNISVEVAIQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVFNDYAKK
FGHIKENDKNFTGDDIREGLTGVISIKIEEPQFEGQTKTKLGNSEVRGIVDSIVGENIGI
FLEENPNIGKMIVDKALMAARARDAARKARELTRKSVLERSTLPGKLADCSSKDPRECEI
YIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMITAFGAGIGN
DFDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRNLIDDGHVYIAQPPLYKVSKGK
KDYYAYSDPELESVLSELGGKDNSTDIQRYKGLGEMNASQLWDTTMDPEKRILLKVNIED
AMAADEIFTILMGEKVEPRKEFIQQNARNVVNLDI
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttggaacaaaataacaaaaaatatgatgaaaatcagatacaagttcttgaaggattagaa
gcagtaagaaaaagaccaggaatgtatattggaagcactagttcaagaggacttcatcat
ttagtatatgaaatcgtagataatagcattgatgaggctttagcaggatattgtaataag
atagaagtatacattaatgaggataattcgattacagtaaatgatgatggtagaggtatg
cctgtcggaatacatcctaagatgggaaaatctactgttgaagttataatgactatatta
catgcaggtggtaaatttggaggagggggatataaggtttcaggtggattacacggagtt
ggtgcatctgtagttaatgctctttcagaagaatgtactgtcacagttaagagagatgga
catatatggcagcaaaattatagtaaagggaaggttcttaatgagctttctaaaataggg
gatagtgatcagactggaacacagacatattttaagcctgatacagaaatatttgatgaa
atagtatttgattttgaagttttatctcaaagattaagagagttagctttcttaaacaaa
ggaatatatataaagttagtagataaaagagatgaaaaagaagaggttttccattatgag
gggggaattaaatcatttgttagctatttaaataggaacaaagttccacttcatgaagaa
ccaatatatatcgaaggcgtgaaagataatatatccgtggaagttgctattcaatataat
gatggttacactgaaaatatattttcctttgcaaataatattgatacagttgaaggtgga
acccatttagttggatttaaaactgcattaaccagagtatttaacgattatgcaaagaaa
tttggacatataaaagaaaatgacaagaattttactggtgatgacataagagaaggactt
actggagtaatatctataaagattgaggaacctcagtttgaggggcaaacaaaaactaaa
ttaggaaatagtgaagtaagaggaattgtagattctattgttggagaaaatataggaata
tttcttgaggaaaatcctaatataggtaaaatgattgttgataaagctctaatggctgcc
agagccagagatgcagctagaaaagcaagagaattaacacgaaaatcagtcttggaaaga
tctacattgcctgggaaattagcagattgttcatctaaagacccaagggaatgtgaaatt
tatatagtcgaaggagattcggcaggtggatctgcaaagcaaggaagaaatagaaaattc
caagctattttacctttaagaggtaaaatattaaatgttgaaaaacaaagattagataga
atattaaatgcagatactattagatcaatgattactgcatttggagcaggcataggaaat
gattttgatgttgaaaagattagatataatagaattataattatgacagatgccgatgtt
gatggtgctcatattagaacattattactaacatttttttatagatatatgaggaattta
atagatgatgggcatgtatacatagcgcaaccaccattatataaagttagtaaaggtaaa
aaagattattatgcatatagtgatcctgaattagaaagtgttttatctgagctaggtgga
aaagataattcaactgatattcaaagatataaaggtcttggagaaatgaatgcatctcaa
ttgtgggatacaactatggatccagaaaagagaattttattaaaagtaaatatagaagac
gctatggctgccgatgaaattttcaccatattgatgggggaaaaagttgagccaagaaaa
gaatttatacaacaaaatgctagaaatgttgttaatttagatatttag
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