Clostridium sp. MF28: AXY43_16840
Help
Entry
AXY43_16840 CDS
T11014
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
clom Clostridium sp. MF28
Pathway
clom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXY43_16840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clom03021
]
AXY43_16840
03019 Messenger RNA biogenesis [BR:
clom03019
]
AXY43_16840
Transcription machinery [BR:
clom03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AXY43_16840
Messenger RNA biogenesis [BR:
clom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AXY43_16840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
NACHT
Spore_III_AA
ATPase_2
AAA_22
AAA
AAA_25
AAA_14
ABC_tran
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AVK49512
LinkDB
All DBs
Position
3893830..3895272
Genome browser
AA seq
480 aa
AA seq
DB search
MTKKEYESMTLTKLKDIAKDLGVKNISKYKKNELIEEILKVPSNFIEKNGVILRENIAPK
NVEETRSVMPRSNNTESNKESNDSEVKSRTNEIGNVEKKENLKEMINESNVANGILEILE
NNSFGFLRCKNYLTSSEDVYVSPSQIRRFNLRTGDEVEGKVREAKETEKFKALLFVQKVN
GEHPEKAIGRKSFETLTPIYPKERLKLETSDSNDLSSRLMDIICPIGKGQRGIIVAPPKA
GKTTLLKKIAQNISKNYPDVKLIVLLIDERPEEVTDMKRSINGDVVYSTFDEEPQNHAKV
AQMVLERAKRMVEQGKDVVILMDSITRLSRAYNLTITPTGRTLSGGLDPGALIMPKKFFG
AARKIEEGGSLTILATALIETGSRMDDMIFEEFKGTGNMEVHLDRRLQERRIFPAIDIYK
SGTRKEDLILSKEELEVAFSIRKKMYRDGNSDDITENLINMLSKTGNNKEFIDVFQKKVQ
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaaaaagaatatgaaagcatgactttaacaaagttaaaagatattgctaaagat
ttaggtgtgaaaaatatatctaaatataaaaagaatgagctaatagaagaaatattgaaa
gttcctagtaactttatagaaaagaatggtgttatattaagagaaaatatagcacctaag
aatgtagaagagactagaagtgttatgcctagaagtaataatactgagtcgaataaagaa
agcaatgattcagaagtaaaatctagaacaaatgaaattgggaatgtggaaaagaaagaa
aatttaaaagaaatgataaatgaatccaacgttgcaaatggaattttagaaatacttgaa
aataatagttttggtttcctaagatgtaaaaactatttaactagtagcgaagatgtttat
gtatctccatctcagattagaagatttaatttaagaacaggagatgaagttgaaggtaaa
gtaagagaagcaaaggaaactgagaagtttaaagctttattatttgttcaaaaagttaat
ggagagcatccggaaaaagctataggaagaaaatcctttgaaacattaacaccaatatat
ccaaaagaaagattaaaattagaaacctctgatagtaatgatttatcgtctagactgatg
gatataatatgcccaataggaaaggggcaaagaggaattatagtcgctccaccaaaggct
gggaaaactacgctattaaaaaagattgctcaaaatatatctaaaaattatcctgatgta
aagcttattgttttgcttatagatgaaagaccagaagaagttacagatatgaagaggtct
attaatggagatgtagtttattcaacttttgatgaggaaccgcaaaaccatgcaaaggta
gctcaaatggtcttagaaagagctaagagaatggttgagcaaggtaaagatgttgttatt
cttatggatagtataactagattatcaagagcatacaatttgacaataactcctacaggt
agaacattatcaggtggtcttgatccaggtgcgcttataatgcctaaaaagttttttgga
gcagcaagaaaaattgaagagggcggaagtttaacaatactagctactgcactaattgaa
acaggatcgagaatggatgatatgatatttgaagaatttaaaggaacaggtaatatggag
gttcatttagatagacgtctacaagagagaagaattttcccagctatagatatatataag
tctggaacaagaaaagaagatttaattttatctaaagaagaattagaagtagcattctcc
ataaggaaaaagatgtatagagatggaaactcagatgatattacagagaatttaattaat
atgttatctaaaactggcaacaataaagaatttatagatgtattccagaaaaaagttcaa
tag
DBGET
integrated database retrieval system
