Clostridium sp. MF28: AXY43_17770
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Entry
AXY43_17770 CDS
T11014
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
clom Clostridium sp. MF28
Pathway
clom02020
Two-component system
clom02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
clom00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AXY43_17770
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AXY43_17770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clom03021
]
AXY43_17770
Transcription machinery [BR:
clom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AXY43_17770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_23
Sigma70_r4_2
HTH_17
Xre-like-HTH
HTH_Crp_2
HTH_Tnp_ISL3
HTH_3
HTH_IclR
HTH_13
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AVK49681
LinkDB
All DBs
Position
4089841..4091232
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AA seq
463 aa
AA seq
DB search
MNLDYNMKMTQEQRLVLTQNMQQSIKLLQMSLHDLREYIDNEYSENPVLEVNEEISSYDD
EQINRDVNIEDKYDHKKLVEELYSDNYKDRSETNYSNEEVSPLNFIEKKVSLKEYLQEQL
IEADIDQYMLDICNYIVESLDYRGYLEISTGELAEELNIPEEIVNKALDVVQALEPYGIG
ARNIKECLLIQSLKLNILDDVIEKIILNHLENIAENKYETVAKDLNINPREAQRYGDLIK
KLEPKPSRGFYTGEEVNYIIPDAEIKNVDGEFFILMNESVLPRLMINKTYRDVLRNNQDS
ETNTYVKEKINQALFLIKSIEQRKNTLYKVLECVVEKQNDFFKFGRQYIKPLTLKEVAEI
INLHESTVSRAIKDKYVLTSYGTVKIKDLFASGLSSNNNEDMATSKIKNEIKKIIEEENK
SKPLSDQLISSMLVEKNMNISRRTVAKYREELGIKSSSARKRL
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaatttggattataacatgaagatgacccaggaacagagattagtactcactcaaaat
atgcaacaatccataaagcttttacaaatgtctcttcatgatttgagagaatatattgac
aatgaatattcggaaaatccagtgttagaggttaatgaggaaataagctcatatgatgat
gaacagataaacagagacgttaatatagaagacaaatacgatcataaaaaattagttgaa
gaattatattctgataattacaaggatagatcagaaacaaattattctaatgaagaagtt
tcgccattaaatttcattgagaaaaaagtatcactaaaagaatatttacaagagcagttg
attgaagccgacatagatcaatatatgttagatatatgtaattatattgttgaatcattg
gattatagagggtatttggaaatatcaacaggagaacttgcagaagaattgaatatacct
gaagagatagttaataaggcattagatgtggtacaggcgttggaaccatatggaataggt
gctaggaatatcaaggaatgtctgcttatccagagtctaaaattaaatattttagatgat
gtaatagaaaagataattttaaatcatttagaaaatattgcggaaaataaatatgaaact
gtggcaaaggaccttaatataaatccaagagaagctcaaagatatggtgatttaataaaa
aagctggaacctaaaccatcaagaggattttatacaggagaagaggttaattatataatt
cctgatgctgaaataaagaatgttgatggtgaatttttcattttgatgaatgaaagtgtt
ttgccaagacttatgataaataaaacatatagagatgttttaagaaataatcaagattcg
gaaacaaacacttacgttaaggaaaaaattaatcaagcacttttcttaattaagtcaata
gagcaaaggaaaaatacattatataaggtgttagaatgtgttgttgaaaagcaaaatgat
ttctttaagtttggaagacagtatataaaacctttgacattaaaagaagttgcagaaata
atcaatcttcatgaatctactgtaagtagagcaattaaagataaatatgttttaacaagt
tatggaacagttaaaataaaagatttattcgcaagtgggttatcctcaaataataatgaa
gatatggcaacttcaaaaataaaaaatgaaataaagaaaataatagaagaagagaataaa
agtaagcctttgtcagatcaactaataagttctatgttagtagaaaaaaatatgaatata
tctagaagaactgtcgcaaaatatagagaggaattaggtattaaatcatcttctgcaagg
aagagattataa
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