KEGG   Clostridium sp. MF28: AXY43_20775
Entry
AXY43_20775       CDS       T11014                                 
Name
(GenBank) signal recognition particle
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
clom  Clostridium sp. MF28
Pathway
clom02024  Quorum sensing
clom03060  Protein export
clom03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:clom00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    AXY43_20775
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    AXY43_20775
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AXY43_20775
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:clom02044]
    AXY43_20775
Enzymes [BR:clom01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     AXY43_20775
Secretion system [BR:clom02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   AXY43_20775
  Eukaryotic Sec-SRP protein
   AXY43_20775
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N AAA_22 AAA_17 CbiA AAA_31 nSTAND3 AAA_14 Zeta_toxin SRPRB ResIII MMR_HSR1 ParA AAA_18 AAA_30 cobW ATP_bind_1 Arf APS_kinase AAA_16 NTPase_1 AAA_24 AAA_25 ArsA_ATPase NPHP3_N ATPase AAA_33 Roc PduV-EutP KAP_NTPase Acetone_carb_G
Other DBs
NCBI-ProteinID: AVK50233
LinkDB
Position
4796027..4797379
AA seq 450 aa
MAFEGLGEKLQETFRKLKGKGKLTEKDIKEAMREVKLALLEADVNYKVVKQFISSVSSKC
VGSEVLESLTPGQHVIKIVNEELTNLMGGTESKLNYSSSGLTVIMLVGLQGAGKTTMCGK
LALNLRKNNKKPLLVACDIYRPAAIKQLEVVGKQIEIPVFSMGDKVSPVEIAKNAITHAK
DNGNNVVIIDTAGRLHIDEELMQELKNIKDNVNPSEILLVVDAMTGQDAVNVAENFNNDL
DLSGVILTKLDGDTRGGAALSIKTIIDKPIKYAGVGEKMNDFEVFHPDRMASRILGMGDV
LSLIEKAQEAIDEKEAADLGKRMLNQEFNFEDYLMAMEQMKKLGPLNKIMEMIPGLNSKE
LQGVDFDKGTEALDKTKAIIQSMTLKERRNPSLILKSPSRKSRIAKGSGTNIQEVNKLMK
GYEMMKKNMKQMKSFQKQAKKGGLFGKLPF
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggctttcgaaggattaggtgaaaaattacaggagacttttagaaaattaaaaggtaaa
ggaaagttgactgaaaaagatataaaagaagccatgagagaagtaaagcttgccttacta
gaagcagatgttaactataaagttgttaaacaatttatttcttctgttagttctaaatgt
gttggaagtgaagtccttgaaagtctaacaccaggacaacatgtaataaagatagttaat
gaagaacttactaatcttatgggtggaactgaaagtaaacttaattatagtagttcagga
cttacagttataatgttagttggattacaaggagcaggtaaaactactatgtgtggtaaa
cttgcgctaaaccttagaaaaaataataaaaagccattattagtagcttgcgatatttat
agaccagcagctataaagcaattagaagttgtaggaaaacaaatcgaaattccagtattt
tcgatgggagataaagtaagccctgttgaaattgcaaagaatgcaatcactcatgcaaaa
gataatggaaataatgtagttatcatagatactgcaggtagacttcacattgatgaagaa
ttaatgcaggaactaaaaaatataaaagataatgtaaacccatcagaaatattattagtt
gttgatgctatgacaggtcaagatgctgtcaatgttgcagaaaactttaataatgattta
gatttaagtggagttattttaacaaaactagatggtgatactagaggcggagctgcactg
tcaattaagactataattgataagccaatcaaatatgccggtgttggcgaaaaaatgaat
gattttgaagtgttccatcctgatagaatggcatcaagaattttaggaatgggtgatgta
ttatcgcttattgaaaaagctcaggaagccattgatgaaaaggaagcagctgatttaggt
aagagaatgttaaatcaagaatttaactttgaggattatctaatggcaatggaacagatg
aaaaaacttggacctttaaataagattatggaaatgatacctggcttaaattcaaaggaa
cttcaaggagttgactttgataaggggactgaggctcttgataagactaaggcgattatt
caatcaatgacattaaaagaaagaagaaatccaagtcttatactaaaatctccatcaaga
aaaagcagaatagctaaaggatcaggtactaatatacaagaagttaacaaactcatgaag
ggctatgaaatgatgaaaaagaacatgaagcaaatgaagtcattccagaagcaggcaaag
aaaggcggcctatttggcaagttacctttctaa

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