Clostridium sp. MF28: AXY43_23760
Help
Entry
AXY43_23760 CDS
T11014
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
clom Clostridium sp. MF28
Pathway
clom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXY43_23760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clom03019
]
AXY43_23760
03400 DNA repair and recombination proteins [BR:
clom03400
]
AXY43_23760
Enzymes [BR:
clom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXY43_23760
Messenger RNA biogenesis [BR:
clom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXY43_23760
DNA repair and recombination proteins [BR:
clom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AXY43_23760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
HTH_40
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVK50791
LinkDB
All DBs
Position
5441690..5444140
Genome browser
AA seq
816 aa
AA seq
DB search
MDNVALNYLEKYYGYKSFRKGQEDIISKIINGEDVLAIMPTGGGKSICYQMPALMLEGIT
IVISPLISLMKDQVDTLKDMGIKGALINSTLSAIEEKEVINNLENSEIKILYIAPERLES
FEFLSVISKCNISQIAIDEAHCISQWGHDFRGSYRKISNFISLLQKRPIITAFTATASQE
VREDIINLLKLNNPKVFITGFDRENLSISVIKSGNKKEYLYKYIENNKEVSGIIYAATRK
EVNNLYESLQAKGYNVTCYHAGLSEHTRKENQENFIYDRAGIMIATNAFGMGIDKPNIRY
VVHYNMPRNIESYYQEIGRAGRDGEKSECVLLFSPQDVQVQKYLIENSIEDVERKNNQYR
KLQQMMDFVYSNYCYRKYVLEYFGETYNGQCDNCSNCLSEGEFVDKTIESQKVLSCIYRM
KVKFGIGMLVDVLRGSKNKKVIQFHFNELSTYGLMKEYSAEDLKNFINTLISHGYINVVE
GTYPVLSLNDRSRRVLTSQEKVQLKEFRVEKKASEENELFEILRNLRQELAKENNVPPYI
IFGDVTLKEMTVNYPISKYEMLKVSGVGEVKYNKYGKVFEDVIRNFVEEHEIAISDHDEG
LLDEQKSINKDEESRIEVKTDLELYERLDNARKEFAKEERALPQAILTMNTLKEISGRCP
SSLDELKDITGMGPKKISLYGEKIINIVNEYLSENDRKVEWIERKRRKVIIDGETRENDQ
ISIDMLKQNITIHEVSQKLEISISTILGYVTDYIKEFGENAFHINLEEFYNKEDEKLIID
ACQKHGYDKINVLKKELPSHIKYESIRAVILKKYYL
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggataatgtagctttaaattatttggagaaatattatggatataagtcatttagaaaa
gggcaagaagacataataagtaaaataataaatggagaagatgtacttgccataatgcca
actggaggaggaaagtcaatttgttatcagatgccagcattgatgctagaaggaataaca
atagtaatttctcctttaatatccctaatgaaagatcaagtagatacgctaaaagatatg
gggataaaaggcgctttaataaatagtacattgagtgctatagaagaaaaagaagtaata
aacaatttggaaaatagtgaaataaagattctttatatagctcctgaaagattagaatct
tttgagtttttgagtgttatttctaaatgtaatatttctcaaatagctatagatgaagct
cattgtatttctcaatggggacatgattttaggggaagttatagaaaaatatcaaatttt
ataagtttacttcaaaagagacctataataacagcatttactgcaactgcatcacaggaa
gtgagagaagatataataaatcttcttaaattgaataatccaaaagtctttataacaggt
tttgatagagaaaacttatctatcagcgtgattaaaagtggtaacaaaaaggaatattta
tataaatatatagaaaataataaagaagtttcaggcattatatatgctgcaactaggaaa
gaagtcaataatttatatgaatctttgcaagcgaaagggtataatgtgacttgctatcat
gcgggattatctgaacatactagaaaagaaaatcaagaaaattttatatatgatagagct
ggtattatgatagcaaccaatgcttttggaatggggatagacaaacctaatataagatat
gttgtacactataatatgccaagaaatattgaaagttactatcaagagattggaagagca
ggaagagatggagaaaagagcgaatgcgtattattattttcgcctcaagatgttcaggtc
caaaagtatttaatagaaaactcaatagaagatgtagagagaaagaacaatcaatataga
aagcttcaacaaatgatggattttgtatatagcaattattgctatagaaaatacgttttg
gagtattttggagaaacatataatgggcaatgtgataattgcagtaattgtttgagtgaa
ggagagtttgttgataagacaatagaatcgcaaaaagttctttcatgtatatacaggatg
aaagttaaatttggaattggaatgcttgtagatgtgcttagaggatctaaaaataaaaaa
gttattcaatttcattttaacgagctttctacttatggattaatgaaagaatattcagca
gaagatctcaaaaactttattaatacattgatttctcatggatatattaatgtggttgaa
ggtacatatccagtgttgagtttaaatgatagatcaagaagagtattaacatctcaagaa
aaagttcaattaaaagagtttagagtagaaaagaaagctagtgaagaaaatgaacttttt
gagattcttagaaatttaagacaagaactggcaaaggaaaacaatgttccaccatatata
atattcggtgacgttacactaaaagaaatgactgtaaattatccgatatcaaaatatgaa
atgcttaaagtttctggagttggagaagttaaatataataaatacggaaaagtatttgaa
gatgtaatacggaattttgtagaagaacatgaaattgctatatctgatcatgatgaaggc
ttgctagacgaacaaaagagtataaataaagatgaagaatctagaatagaagttaaaaca
gacttagaattatacgagagactagacaatgcaagaaaagaattcgctaaagaagaaaga
gcattaccccaagcaatactgacaatgaatactctgaaggaaataagtggaagatgcccg
agttctttagatgaattaaaagatataacaggcatgggacctaagaaaataagtttgtat
ggagaaaagataataaatatagtaaacgaatatttgtcagaaaatgatagaaaagtagaa
tggattgaaagaaaaagaagaaaggttataattgatggagagactagggagaatgatcaa
atctcaatagatatgcttaagcagaacataactatacatgaagtatctcaaaaattagag
atctcaatttcaactatcctaggatatgtaacagattatataaaagagtttggagaaaat
gcatttcatataaatttggaagaattttataataaagaagatgaaaagctaataatagat
gcatgccaaaagcatggatatgataagataaatgtactaaaaaaagaactaccttcacat
ataaaatatgaaagcataagagctgtaattttaaaaaagtactatttgtag
DBGET
integrated database retrieval system
