Condylostylus longicornis: 129606229
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Entry
129606229 CDS
T09756
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
clon
Condylostylus longicornis
Pathway
clon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129606229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clon03019
]
129606229
Enzymes [BR:
clon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129606229
Messenger RNA biogenesis [BR:
clon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129606229
mRNA degradation factors
3'-5' decay
Pan complex
129606229
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
zf-CCCH_2
DUF3978
Motif
Other DBs
NCBI-GeneID:
129606229
NCBI-ProteinID:
XP_055372395
LinkDB
All DBs
Position
Unknown
AA seq
1248 aa
AA seq
DB search
MDYGYVGGEGYGPPDNYISTNDVYDSANRTVNYSPAFRVFNIGPTEAEYQELGGILADGG
ESYGVSTVQFDNYEELLWTGNQGGRVTSYYGGSMEKYTSFQVHANDIVRQIGTTDTGVLA
LTQTSLSHRHRRGNLKFTHRSAHMTEMICMLQLSPSRIVMGGFQHDIIDFDVPTVTEKSM
SNAGTNGCTVLRKNCRYLFAGEPYGTITLRDLTTLEVQHTIKTHSGSLSDFDVQGNYLVS
CGFSDRQGILSMDRFLMVFDLRMLRLVSPIPILIDAQMLRFLPSQYSRVAITSMQGEMQL
VETVELSSPRICLYQLNTTGSSLTFDISSTSQAIAFGNDNGHINMICSVHAPEPQFNAFS
RQTELAEPVDDLPSTEEINTEEASSYSFSSTSLPGQDLEESYQSETAISDIYKQFANGSL
PNVDYQNKSTDFNLQQSPKRPQLPYCENAQASGSSGNEHIQPVSTETNGMKIIPKRYRKV
EVKYSKLGAQDFDFELHNQTCFAGLEATLPNSYCNPMLQVLYFIKPLRRKILQHSCSKEF
CLSCELSFLFNMLDKSAASSPCQASNFLRSFRKVHEAAALGLIVTDRAVNVNLTSLIQNW
NRFIIHQMHYEILDSWKNGRLNKQTNAFAMEYFLALNQSRLINPNLSWDSREINYAEIFK
SLDVNNGQTSLHNIGSNETEKSRINEDTDISNLFGTRQRCVNRCLKCNEEKPKRNILMVC
NLVYPIGTKDNEYLTFAQILKSSLCPEKTLPTFCEKCKKFTPTKQSIKITSLPKILSLNC
GLSNEKEIEFLKWQLSRIVNASNINSTQFTTTKPCRYGVNCNRADCHFSHPFRNSPSSSN
NGFGATCETKQKSWFPLGFSMDVDINGNLAIRSEIRSSKISESQASNSSTVGFREELNLT
DPVISNDTHRDYRLSAAICQIDDGNHKNLVALINVPKSYHEMKLGNCDDTNNQWYLFNDF
SISPVSCQESVWYTLDWKVPCVLIYSSLEVLEVDEEKENRYFNPFLQELLNPVHQIPLHH
TIHTFKRLSAHEMPKPGDLVAMDAEFVTLNAEENELRPDGTTMTIKPCHMSVARISCIRG
QGPDEGIPFIDDYISTREQVVDYLTEFSGIQPGDLDANFSNKRLTTLKNSYQKLKYLVDS
GVIFVGHGLKNDFRVINIIVPSEQIIDTVHLFHLPHHRMISLRFLAWHFLGTKIQSETHD
SVEDARTSLQLYKHYLKLQTENKLNWALKEVYERGKRLCWKVPDDYYH
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggactatggttatgttggcggggagggctatggccctcccgataattatatatcaaca
aatgatgtttatgactctgcaaatcgtacagtaaattattcaccagcatttcgcgttttt
aatatcggaccaacagaggctgaatatcaagagcttggtggaattttagctgatggcggt
gaaagctatggagtctcaactgtacaatttgacaattacgaggaactattgtggacggga
aatcaaggaggtcgtgttacatcatattatggaggatctatggaaaaatacacatcattt
caagttcatgcaaatgatattgttaggcaaatcggcacaacagacactggagttttagcc
ttgacacaaacatctttaagtcataggcatagacgtggaaacttaaaattcacgcataga
tctgctcacatgaccgaaatgatatgtatgcttcaattatcaccgtccagaattgtaatg
ggtgggtttcaacacgatataatagactttgatgttccaacagtgacagaaaaatctatg
tctaatgctgggactaacggatgtacagtactacgaaaaaattgccgctatttgtttgct
ggcgaaccgtatggtacaataacattacgtgatttaacgactttagaagttcaacatact
attaaaactcactcaggaagtttatcagattttgatgtacaaggaaattatttggtctca
tgtggttttagtgatcgtcaaggtattttatctatggatcggttcctgatggtatttgat
ttaagaatgcttagactagtttcaccaattccaatattgattgatgctcaaatgcttcga
tttttgccatcgcaatattctagagtagccatcacatccatgcaaggcgaaatgcaactt
gttgaaaccgtcgaattaagctctccaagaatctgcctatatcagttgaacacaacaggt
agctctttgacttttgatattagttcaacaagtcaagcaattgcatttggtaatgacaat
ggtcatatcaacatgatctgttcagtgcatgcccccgaacctcaatttaacgcattttca
aggcaaacagaacttgcagagcctgtagacgatcttccaagcactgaagaaatcaatact
gaggaagcgagttcttattcattttcatcgacttcactgcctggacaagatttagaagaa
agctatcaatcagaaactgcaatatctgatatatacaaacagtttgctaatggaagttta
ccaaatgttgattatcaaaacaaaagtactgattttaatttgcaacagagtccgaaacgc
cctcaacttccttactgtgaaaatgcgcaggcttctggctccagcgggaatgaacacatt
caaccagtttctaccgaaacaaacggaatgaaaattattccaaagcggtacagaaaagta
gaagttaagtactccaaattaggagcacaagattttgattttgaacttcacaatcagacc
tgtttcgccggtttagaggcaactttaccaaattcttattgtaatcccatgttacaagtc
ttatattttattaaaccgcttagaagaaaaattttgcaacattcctgctcgaaagaattc
tgtttgtcatgtgaactcagctttttattcaacatgttagacaaatctgctgcatcaagc
ccgtgccaagctagcaattttttgagatcattccgtaaggtccatgaagctgcagcattg
ggattaatagttacagatcgcgctgtaaatgtaaaccttacaagtttaattcaaaattgg
aatagatttataatacatcagatgcattacgaaatcttagattcttggaaaaatggtcgc
cttaacaaacaaacaaatgcctttgcaatggaatattttttggcgttaaatcaatctcga
cttattaaccctaatctgagctgggactctcgagaaattaactatgcagaaatttttaaa
tcactcgatgtcaacaatgggcaaacctccttacataatattggctcgaacgaaactgaa
aaatcaaggataaatgaagacactgacataagcaatttgtttggaactcgacaacgatgt
gtgaatcgatgccttaaatgcaatgaagaaaaacctaaacgaaatattttaatggtatgc
aacttagtttacccaattggcactaaagacaatgaatacttaacttttgcacaaatttta
aaatcgtcactttgtcctgaaaagactttaccaacattttgcgaaaaatgtaaaaaattt
actcctacaaagcaatctattaagataaccagtcttcccaaaattttatctctaaattgt
ggtctttctaatgaaaaagagatagaattcttaaaatggcaactaagtaggatagtaaac
gctagtaacataaattcaacacaattcactaccactaaaccatgtcgatatggtgtaaac
tgtaatagagctgactgtcattttagccatccttttagaaactcaccatcaagtagtaac
aacggtttcggtgctacatgcgaaacaaagcagaaatcatggtttcctcttgggttttct
atggatgttgatattaatggaaatttagcgattcgatcagaaataagaagtagcaagata
tcagagtcgcaggcatccaattcatcaactgttggttttagagaagaattaaatttgact
gatccagtaatttcaaatgatactcatagagattaccgattatcggcagctatttgtcaa
attgacgatggaaatcataaaaatttagttgcactaattaatgttccaaaaagctaccac
gaaatgaaattaggaaactgtgatgatacaaacaatcaatggtacctcttcaatgatttt
agtatatctcctgtgtcttgccaagaatcagtttggtacacgttagattggaaagttcca
tgtgttctaatttattcaagcttagaagtgctcgaagtagatgaagaaaaagaaaatcga
tatttcaatccatttctacaagaacttttaaatccggtccaccaaattccattgcatcat
acaatacacacttttaaacgattaagtgcacatgaaatgccgaaaccgggtgatttagtt
gcaatggatgcggaatttgtaacattaaatgcagaagaaaacgagttacgtcctgacggt
acaacaatgacaataaaaccttgtcatatgagcgtagcgcgcatttcttgcataaggggt
caaggccctgatgaggggataccttttattgatgattatatatcaacacgggagcaagtt
gtcgattatttaaccgaattttctggaatacaacctggtgatttagatgctaattttagt
aataaacgtttaacaactcttaaaaactcatatcaaaaattaaagtatttagttgatagt
ggtgtgatatttgttggacacggactgaaaaatgactttagagtgataaatattattgta
ccctccgaacaaataatcgatacagtgcatttatttcatttaccgcatcatcgaatgata
tcattgagatttttagcatggcattttttaggaacaaaaatccaatctgaaactcatgat
tcagtggaggatgccagaaccagcttacaactatataagcactatttgaagttacaaact
gaaaataaattgaactgggccttgaaagaggtttatgaacgtgggaaacgtttatgctgg
aaagtaccagacgattattaccattaa
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