Condylostylus longicornis: 129606568
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Entry
129606568 CDS
T09756
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
clon
Condylostylus longicornis
Pathway
clon03013
Nucleocytoplasmic transport
clon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clon00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129606568
03015 mRNA surveillance pathway
129606568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clon03019
]
129606568
Enzymes [BR:
clon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129606568
5.6.2.5 RNA 5'-3' helicase
129606568
Messenger RNA biogenesis [BR:
clon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129606568
mRNA cycle factors
Common to processing body (P body) and stress granule
129606568
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
Helicase_RecD
DEAD
NPHP3_N
AAA_22
ATPase
nSTAND3
AAA_16
SRP54
AAA_10
AAA
Motif
Other DBs
NCBI-GeneID:
129606568
NCBI-ProteinID:
XP_055372919
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MSTDTYSVDAALTFLEDEDIMADTQASQFDFQDFTQPSQGQTQDNLNDSGKMTDFKLIRS
SLNENKALVPPEDNDLQFEEEEDETQLVQELPAHACKYCGINDPGTVVMCNICKKWFCNG
RGGTSASHVVNHLVRAKHREVTLHADGPLGETILECYSCGVRNVFVLGFIPAKADSVVVL
LCRQPCAAQNSLKDMNWEQDQWKPLISDRSFLPWLVKIPTEQEQLRARQISAAQINKLEE
LWKENIEATFQDLEKPGIDKNPSQVLLRYEDGYQYQKTFGPLVGLEAEYDKKLKESQTQE
NIEVRWDVGLNKKIIAYFTLPKTDGDMKLMHGDELNLRYAGELHKPWSSLGQVIKIPDNY
GEDIGLELKISQQVPIECTSNFAVDFIWKSTAFDRMQMALRKFAVDDNCVSNFIYSKLLG
HGRHDGADEVTFRGNIPKHFSAPNLPDLNRSQIYAVKHAIQRPLSLIQGPPGTGKTVTSA
TIVYQLVKMSGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHN
QIRNMETNVELVKLQQLKDETGELSSADEKRYRTLKKAAERELLDAADVICATCVGAGDP
RINRIKFTSILIDESMQSTEPECMVPIVLGAKQLILVGDHCQLGPVVRCKKAAKAGLSQS
LFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLRVAFPWPQKDR
PMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTKFLKVGIKPEQIGIITPYDGQRAYLV
QYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALT
RAKYGIIIVGNPKVLSKQPLWNHLLNFYKDRNVLVEGSLNNLKESLIQFQKPKKIINTLN
PGTHFMLNSVYDAKEVLQPASLYDKNNDALNQCRRGLQNTYISYPQNHNMNFDMLAKNHH
DSISFISPQRAQAAINSMPIPVGMFMNMSNMPSRFYNKHHQAVQAVKQGKKPVRSSVKSQ
EKSSLLNANSYCTPLTQNQQNMTQPGYLSQHSEFSQISQADGMLSQDSNFQVNFGDKMNL
DVSNPRRFYQS
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgatacatattccgttgatgcagctttaacattccttgaagatgaggatata
atggcagatactcaagcttctcaattcgattttcaagattttacacaaccatcacaagga
caaactcaagataatttaaatgactctggtaaaatgacggattttaaattgattagaagt
tcattaaatgagaataaagctttagtcccaccggaagacaatgatcttcaatttgaggag
gaagaggatgaaacacaacttgttcaagaattacctgcacatgcttgtaaatattgtggt
attaatgatcctggaacagtagtcatgtgtaatatttgtaaaaagtggttttgtaacgga
cgtggggggacatcagcttctcacgttgttaatcatttagtacgtgcgaaacatcgtgaa
gtcaccttacatgctgatggccctttaggggaaaccattttagaatgttattcctgtggc
gttcgcaacgtttttgttcttggctttatacccgcaaaagcagattctgttgttgtactt
ttatgcagacaaccatgtgctgcgcaaaattcacttaaagatatgaactgggaacaagac
caatggaaacccttaatttcagaccgatcctttctgccgtggcttgtaaaaataccaaca
gaacaagaacaattacgagctcgacaaatatctgccgcacaaataaataaactggaagag
ctttggaaggaaaatattgaagcaacatttcaagatttggaaaaaccaggtattgacaaa
aacccttctcaagttttattacgttacgaagatgggtatcaataccagaagacatttgga
cccctagtgggtcttgaagctgaatatgacaaaaaattaaaagaatcccaaacgcaagaa
aacatagaagtgcggtgggatgttggtttaaacaaaaaaataattgcatattttactttg
ccaaaaacagacggtgacatgaaattaatgcatggagatgaacttaatcttcgttatgcc
ggagaattacataaaccttggagtagtttaggtcaagttataaaaattcctgacaactat
ggcgaagatattggtcttgaattaaaaattagccaacaagtaccaattgaatgtacatca
aattttgccgtcgattttatttggaaaagcacagcatttgatcgaatgcaaatggcattg
aggaaatttgcagtcgatgataattgcgtttctaattttatatactcaaaattacttggt
catggtcgccatgatggagccgatgaagtaacatttagaggaaatattccaaaacatttt
agtgctccaaacttacctgacttgaacagatcgcaaatatatgctgtaaaacatgcaatt
caaagaccactgagtttgattcaaggccctcccggtacaggaaagactgttacctccgca
acaattgtttaccaacttgtaaaaatgagtggtggaactgttcttgtttgtgctccaagt
aatacggccgtagatcagttgaccgagaaaattcataggactaacttaaaggtggtaaga
gtttgtgcaaaatctcgcgaagcaattgatagtccagttagttttttggcattacataac
caaataagaaatatggaaacaaatgtagaattggtcaagctccaacaacttaaagatgaa
acgggtgaattaagttctgcagatgaaaaacgatatcgtactttgaagaaagctgctgaa
agggaacttctggatgctgcagatgtaatatgtgctacttgtgtaggtgccggtgatcct
agaatcaatcgaatcaaatttacgtcaattttaatagatgaaagtatgcaatctaccgaa
cctgaatgtatggtacccattgttttaggggccaaacaattaatattagttggtgatcat
tgtcaattagggccagttgtaagatgtaaaaaagctgcaaaagcaggcctctcccaaagt
ttgtttgaaaggttggtagtcctgggaatacgaccttttaggttagaagtacaataccgc
atgcacccagaattgtcacaatttccatcaaatttcttctatgaaggtagcttgcaaaat
ggggtctgcgcagaagatcgaaaactgagagtagctttcccatggccacaaaaggacaga
ccaatgttcttcctagtaacgcaaggtcaagaggaaattgctggatctggaacatcgttc
ctgaatcgaactgaagcagcaaatgttgaaaaaattacaacgaaattcttaaaagttgga
attaaacctgagcaaatcggtattattacaccctatgatggacaaagagcttacttagtc
caatacatgcagtatcaaggaagtttgcactctaaattatatcaagaaattgaaattgca
agtgtcgatgctttccaaggcagagaaaaagacataattataatgtcatgtgtaagatcg
aacgaacatcaaggtataggatttttgaatgatccacgtcgtctaaatgttgccttaaca
cgagctaaatatggaattattattgttggaaatcccaaagttttatccaaacaaccttta
tggaatcatttattaaacttctataaagatcgaaatgtacttgtcgaggggtcactaaat
aacttaaaggaatcattgatccaatttcagaaacctaaaaaaattattaataccttaaat
ccaggaactcatttcatgttgaactcggtttatgatgccaaagaagttcttcaaccagca
tctctatatgataagaataacgacgctctcaaccaatgtcgcagaggacttcagaacaca
tacataagttaccctcaaaatcataacatgaactttgatatgctagctaaaaaccatcat
gactcaattagtttcatttctccacaaagagcacaagcagctataaacagtatgcctatt
ccagttggtatgtttatgaatatgagtaatatgccatctcggttctacaacaagcatcat
caagcggtacaagcagttaaacaaggcaaaaaaccagtaagaagttcagttaaaagccaa
gaaaaatcatctttactaaatgcaaacagctattgtacaccgcttacacaaaatcaacaa
aatatgactcaaccaggatatttgtcacaacactcagaattttcccaaatatctcaagct
gatggaatgttatctcaagattccaattttcaagttaactttggtgataagatgaattta
gatgtttcaaatcctagaagattttaccagtcctag
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