Condylostylus longicornis: 129607167
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Entry
129607167 CDS
T09756
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
clon
Condylostylus longicornis
Pathway
clon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129607167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clon03019
]
129607167
Enzymes [BR:
clon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129607167
Messenger RNA biogenesis [BR:
clon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129607167
mRNA degradation factors
3'-5' decay
Ski complex
129607167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
nSTAND3
MTR4-like_stalk
ATPase_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-GeneID:
129607167
NCBI-ProteinID:
XP_055373906
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MNPFIEDQKKRLRNYITLPDVFLKQSDLEIISRTPNQNLLLNVTKSPASSTLKAKRNYLT
GEITDFVEKVISHADANAKNSMSFKRAPNPEETIRGNPMNFPFWPGGFDEPLTDPDTICG
NDVDFDEKPRLVTPPGFINGYTFENDTPLDNREENKVDLLEALEKWRDSIDEWMDSIEDN
DNVENRKNEESVVFHTTQEDEHLLETVESSPVLPISQYSREKLFSSEWAEIIDTSKPVTN
FKEKIYDMAKTFDFELDNFQKQAIIKLEEHEYVFVAAHTSAGKTAIAEYAIALSLKHGTK
VIYTSPIKALSNQKYREFRENFKDVGLLTGDWQIEPKASCLIMTTEILRSMLFNGTETTR
DIEYVIFDEIHYINDPDRGHVWEEVIMLLPENVNIIMLSATVSNFIELAEWVGMTKKRKV
YVITTLKRPIALEHYLYLDSGGKKKENMHLIVDSDNRFRVETFRELKAEFEKKNSKNWSQ
WDNLINHLQKKNMLPVIVFTLSRNRCDFNALALRSKDLNTAKEKSAVHNYFQKYCMSKLK
PEDRNLSQVNLIKTSLERGIGIHHSGILPILKEIVEMAFQEGWVKVLFATETFAMGVNMP
AKSVVFDSFKKHDGQELRFLKPSEYTQMAGRAGRRRNEVGTVILVCKQQLPSEIELQRMI
LGKADSLSSKFRLRYAAILRCLCVDNIQVEDLMKHCFKEFKYKKQLVTITELLKAKEEEL
SKIKNLDNSLQPLESFFDCARRFLEIREKFMKKLLSSPNYLKEIKTGRVIIISFENHYNK
LAIVLSLKITGSDNLKNTIKVLILDNQEIENQETTGNELWHKMISLTKEMQFFRPVGAGG
HRILEIKFEHVTDITKSLIKVEPDLIIKNWEQRQIERFKDSPPGQSVLKAVTELNQLNES
YISNPNSLQTMDLKKGFSLNIEEEDEYLWREFNTSKKNLREILPYTSIANFKSDFKTVFE
KKNLEMEVDELKFRSSPKSLTLYDDYSYKLKVLKELGYVDKNEKVLLKGKIACEMGQNEL
FVMELIYSNSFEDLEPAEIAALLSGLVFQAKTNTEYKINEKLKEGKKRFEEINKRIEDAE
RNNGVNSGPENRLNFGLIEVVYEWARNKPFSEITELTDIQEGIIVRCIQQLNETIQDVKT
AASRISHTTNSILKQKMEEALVAIKRDIVFAESLYTSNTK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctttcatcgaagatcaaaagaaacgtctccgtaactacattaccttacccgat
gtattcttgaagcaatccgatttggaaattatttctaggacaccaaatcaaaatttacta
ctgaacgtaacaaaaagtccggcaagctctactttaaaagcaaaaagaaattatttaaca
ggagaaataactgattttgttgaaaaagtcataagccatgcagatgccaatgcgaaaaat
tcgatgtctttcaagagagctcctaatcctgaagaaactattagaggaaacccaatgaat
tttccattttggcctggtggttttgatgaaccattaacggatcccgacacaatttgtgga
aatgacgttgattttgatgagaaacctagactagttactccgcctggatttatcaatggt
tacacatttgaaaatgacacaccattagataatagagaagaaaataaggtagatcttcta
gaagctttagaaaaatggagggactctattgatgaatggatggattccattgaagataac
gataatgtagaaaacagaaaaaatgaagaatcggtagtatttcatacaacgcaagaagat
gagcacctactagagacggtagaatctagtccagttcttccaatttcgcaatattccagg
gaaaaactgttttccagtgaatgggcagaaataatagatactagtaaaccagttacaaat
ttcaaagaaaagatttatgacatggctaaaacattcgattttgaattagataattttcaa
aaacaagctattataaagttggaggagcatgaatatgtttttgttgcagctcacacttct
gctggaaaaactgctattgctgagtatgccatagctctttctttgaaacatggcaccaaa
gttatatatacgtcccccatcaaagcactgtcaaatcaaaaatatcgcgagtttcgcgaa
aattttaaagatgttggtttgctgacaggtgattggcaaattgaacccaaagcatcttgc
cttatcatgacgacagaaatcctgcgttcaatgttattcaatggaactgaaactacgcga
gatatagaatatgttatttttgatgaaattcattacattaatgacccagatcgggggcac
gtttgggaagaggtgataatgttactaccagaaaatgtaaatataattatgttaagtgca
actgtttcaaatttcatagaattggccgagtgggttggaatgactaaaaaaaggaaagtt
tatgttataaccactttaaagcgtccaattgctttagaacattatttgtatttagatagt
ggaggaaaaaaaaaagaaaatatgcatttgatagttgattcagataatagatttcgggta
gaaacctttagagaattaaaagccgagtttgaaaaaaaaaattcgaaaaattggtcacag
tgggataaccttataaatcatttgcagaagaaaaatatgctaccagtaattgtttttaca
ttatcaagaaatcgttgcgatttcaatgctcttgcattacgtagtaaggatttaaatacc
gcaaaagaaaaatctgcagttcacaattattttcaaaaatattgtatgtcaaaattgaaa
ccagaagatcgcaatttatctcaagttaacttaatcaaaacgtcattggaacgcgggatt
ggtattcatcatagcggcattttaccaatattaaaagaaattgtcgaaatggcttttcag
gagggttgggttaaagtattatttgctacagaaacatttgcaatgggagttaatatgccg
gctaaatcagtggtatttgattctttcaaaaaacatgatgggcaagaactaagatttttg
aagccgtctgagtacacacaaatggcaggaagagcgggccgacgaagaaatgaggttggg
actgtcatattagtatgcaaacaacagttaccttcagaaattgaattacagcgaatgatc
ttagggaaagccgattcattgtcctctaagtttagattgcgttatgcagctattcttaga
tgtttatgtgtggataacatacaagtggaagacttaatgaagcactgttttaaagaattc
aaatataaaaaacaattagttactattactgagttgttaaaagcaaaagaagaagaactc
tctaaaataaagaacttggataacagtttgcaaccacttgagagcttttttgactgtgct
cgcaggtttttggaaataagagaaaagtttatgaaaaaattattaagttctccaaactac
ttgaaagaaattaaaactggcagagtaattatcatttcgtttgaaaatcattacaataaa
ttagcgatagtcttaagtttaaagataactgggtctgataatttgaaaaacactataaaa
gttcttatattagataatcaagaaattgaaaatcaagaaacaactggaaacgaactttgg
cataaaatgatttctttgacaaaagaaatgcaattttttcgacccgtaggagctgggggc
cacagaattctagaaattaaatttgaacacgtaacagatataacgaaaagtctaataaaa
gtcgagcctgatttaataattaaaaattgggagcaacgacaaattgagcgttttaaagat
tcacctccaggccagtcagtgcttaaagctgtaactgaattaaatcaattgaatgaaagt
tatatatcaaatccaaattctttgcaaactatggacttgaaaaaaggatttagtttgaat
attgaggaagaagacgaatatttgtggagagaatttaatacatcaaagaagaacttgcgt
gaaattttaccttacacgagcattgcaaatttcaaatctgattttaaaactgtgttcgaa
aaaaaaaatcttgaaatggaggtggatgaactaaagtttcgcagttctccaaaaagtttg
actctatatgatgattacagttataaattaaaggtattgaaagagcttggttatgttgat
aagaatgaaaaagtacttctgaaaggaaaaatagcatgtgaaatgggtcaaaatgagctt
tttgtaatggaattaatatattcaaatagttttgaggatttagaaccagctgagattgcc
gccctactatctggacttgtttttcaagctaaaaccaacacggaatataaaataaatgaa
aaactcaaagagggtaaaaagcgttttgaagaaatcaacaaacgtattgaagatgcagag
agaaataacggcgttaattcaggaccagaaaatcggctgaattttggattaattgaagta
gtatatgaatgggcaagaaataagccattttcggagatcactgaacttactgatattcag
gagggaatcatagtacgatgtattcagcagctaaatgaaactattcaggatgtgaaaact
gcagcttcgcgaattagtcacacgacgaattctattttgaagcaaaaaatggaagaagct
ttggtagcaattaaacgtgatattgtttttgcagaaagtctgtatacttcaaatacaaaa
tga
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integrated database retrieval system
