Condylostylus longicornis: 129613942
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Entry
129613942 CDS
T09756
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
clon
Condylostylus longicornis
Pathway
clon03020
RNA polymerase
clon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129613942
09124 Replication and repair
03420 Nucleotide excision repair
129613942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clon03021
]
129613942
03400 DNA repair and recombination proteins [BR:
clon03400
]
129613942
Enzymes [BR:
clon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129613942
Transcription machinery [BR:
clon03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129613942
DNA repair and recombination proteins [BR:
clon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129613942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
129613942
NCBI-ProteinID:
XP_055384270
LinkDB
All DBs
Position
Unknown
AA seq
1884 aa
AA seq
DB search
MAANDSKATVRTVKRVQFGILAPDEIRRMSVTEGGIQYAETMEGGRPKLGGLMDPRQGVI
DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPSNPK
IKEIVLKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKEGQPVDPNKKQGHGGCGHYQP
NFRRSGLELMAEWKHVNEDSQEKKIQVTAERVWEIFKHITDEECFVLGMDPKYARPDWMI
VTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELKKNESTGAAPHVIQENIKM
LQFHVATMVDNDMPGMPKAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFIDREQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQIAIKKAKDDVICVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNLPTI
KLSNKAFEKRFKFDWSNERYMRKIFNEDVVKDLTESGYAIQELEAEWEQLCKDREALRQI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRVPTDLSPMKVIQGVRDLLSKCIIVTGNDRI
SKQANENATLLFQCLIRSTLCTKYVAEEFRLTSEAFEWLIGEIETRFQQAQVNPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNSEENKF
QDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFK
AIGEWLLETDGTAMMKVLSERDVDPVRTYSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEND
PMRGVSENIIMGQLPKMGTGCFDLLLDAEKCKHGIEIPSTLGPSLIGGTGMFFGAGATPS
MTPPATPWGPFNTPKYSPLGPMSGMTPGGPSFSPSAASDASGLSPYYSPAHSGSSPSSPG
LSMSPFVPMSPSASPSYSPTSPHYATSSPGAASPNYSPASPQYSPASRIDSASPKYSPSS
PTYNHPSPAFLGTSPGYSPSSNLYSTKSNFATSPAFSSGAGGASNMYSPTNSVYSPSSPN
YSPNSPRYSPSSPFSPSSPSYSPTSPGYSPTSPSYSPSSPKYTPATPSYSPTSPSYSASP
RYSPVSPTYPRTSPKYSPASPTYSPPSPTYDGSPQYTPGSPQYSPTSPKYSPESPIYSPP
SPRHSPATQYSPSGSFSTSPHYSSNLSSYSPNSSKYSPTSPTTYTPTPHHYSPSSTLYSP
PASQRYSPTSPAYSPSSPSYEEPD
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaatgattctaaagctacagttcgtactgtaaaacgagttcagtttggtatt
ctagctccagatgaaattcgtcgaatgtctgttacagaaggtggtattcaatacgccgaa
acaatggaaggcggtcgaccaaaacttggtgggctcatggatccacgacaaggagtaatt
gatcgaagttctcgttgtcaaacttgtgcaggaaatatgactgaatgtccaggccatttt
ggtcatatagatttagcaaaaccagtttttcatatcggtttcattactaaaaccattaaa
attttgcgttgtgtttgtttttattgttccaaaatgttagtttcaccaagtaatcctaaa
ataaaagagatagttttaaagtctaaaggtcagccaaggaaaagattggcatatgtatac
gatttatgtaaaggaaaaacaatttgtgaaggtggtgaagatatggatttaacaaaggaa
gggcaaccagtagatccaaataaaaaacaaggtcacggaggctgcggtcattatcaacca
aattttagacgatcaggattagaattgatggctgagtggaaacatgtaaatgaagattca
caggaaaagaaaattcaggttactgctgaaagagtatgggagatattcaagcacattaca
gacgaggaatgctttgttttgggtatggatccgaaatatgctcggccagattggatgatt
gttacagttttacccgttccgccgttagccgttcgaccagcagttgtaatgtttggggct
gcaaaaaatcaagacgatttaacacataagttagcagatataattaaagcaaacaacgag
ttaaaaaaaaatgaaagcacgggagctgctcctcatgttatccaggagaatattaaaatg
ttacaatttcatgttgcaactatggtcgataatgacatgccaggtatgcccaaagccatg
caaaaatcgggaaaacccttaaaggctcttaaagcaaggttgaaaggaaaggaaggaaga
attcgaggtaatcttatgggtaaacgtgtagatttttcagcacgtactgttattacacca
gatccaaacttacgtattgatcaagtaggtgtaccaagatcaatagcccaaaatctaacc
tttcctgaattagttactccatttaacatagatcgcatgcaggaattagtgaggcgtgga
aattctcaatacccaggtgcgaaatatattgtaagagataacggcgagcgtatagattta
aggtttcatccaaaaccatcagatttacatttgcaatgtgggtacaaagttgaaagacat
ttacgtgacggtgatttagtaattttcaatcgtcaacctacgcttcacaaaatgagtatg
atgggccacagagttaaagttctaccatggtcaacttttcgtatgaacctttcttgcaca
tcaccatacaatgcagattttgatggcgatgaaatgaatcttcacgtaccgcaatcaatg
gaaactcgtgcagaaattgaaaatattcacattactcctcgacaaattataactccgcaa
gcaaataagcctgttatgggcattgtgcaagatacccttacagctgttcgaaaaatgacc
aaacgagatgttttcatagatcgagagcaaatgatgaatttgctcatgtttttaccaaca
tgggacggcaaaatgccccaaccatgtattcttaaaccaaaacctctttggactggaaaa
cagttgttttccctaattatacctggaaatgtcaatatgattcgtactcattctacacat
ccggatgacgaagatgatgggccatataaatggatttctcctggggacaccaaagttatg
gttgaacacggtgaacttatcatgggtatattatgcaaaaagacactgggcacttcggcc
ggatctttgttacacatttgcttcttggaattaggacatgacattgccggtcgattttat
ggtaacattcagaccgttataaacaattggttgttattagaaggtcacagtataggcatt
ggtgatacaattgctgatccccaaacttataacgaaattcaaatagctattaaaaaagcg
aaagatgatgtcatttgtgttatccaaaaagctcacaacatggaacttgaacctactcca
ggtaatactctccgtcaaactttcgaaaatcaagtaaatcgcattttaaacgacgctcgt
gacaaaactggtggatctgcaaaaaaatctttaactgaatacaacaaccttaaagctatg
gtagtttcaggctctaaagggtcaaatattaacatttcacaggttattgcttgcgtaggt
caacaaaacgtagaaggtaaacgcattccttacggtttcagaaaacgaaccctgccacac
tttattaaagacgattacggacctgaatctagagggtttgtagaaaactcatatttggct
ggccttactccctctgagttctactttcatgctatgggtggacgcgagggtctaatcgat
actgctgtaaagactgctgaaactggttatattcaacgtcgtcttattaaagctatggaa
tctgtgatggtaaattatgatggtacagtaagaaattcagtgggacaacttatccaattg
cgttatggagaagacggattgtgtggtgaattagtagaatttcaaaatttacctactatc
aaactgtcaaataaagcatttgaaaaaagattcaaatttgactggtctaatgaacgctac
atgagaaaaatattcaatgaagatgtggttaaagatttgacagaatctggatatgcaatt
caagaacttgaagccgaatgggaacagctttgcaaagatagggaagctttaaggcaaata
tttccaaacggggactctaaagttgtactaccatgcaatttacagagaatgatttggaat
gtgcaaaaaattttccatatcaacaaaagagttccaacagatttatctcctatgaaagta
attcaaggtgttagagatcttctttcaaaatgcattattgtaaccggaaatgatcgtatt
tcaaagcaagctaacgagaatgctacattattatttcagtgcttaattagatctacttta
tgtacaaaatacgtcgcagaagaatttcgtttgacaagtgaagcttttgaatggttaata
ggtgaaattgaaactcgatttcaacaagctcaagtaaacccaggtgaaatggttggagca
ttagctgcacaatcattaggagagccggctacgcaaatgaccttaaatactttccatttt
gccggtgtatcttcaaaaaatgtaactttaggtgtaccacgtctcaaagaaataataaat
atatctaaacgaccaaaagccccatcgctcacagtctttcttacagggggtgcggctcgt
gatgctgagaaagctaaaaatgtcttatgtcgtttagaacatactactttaaggaaagtt
actgcaaatacggcaatttattacgatcctgatcctcaaagaacagtcattgctgaagat
caagagtttgtgaatgtatattatgaaatgcctgatttcgacccgactcgtatttcacca
tggcttttacgtattgaattggatcgaaagcgaatgaccgataaaaaattaactatggaa
caaatagcagaaaaaatcaatgccggttttggcgatgatttgaattgcatattcaacgac
gataatgcagataaattagttcttcgtataagaattatgaatagtgaagagaacaaattt
caagatgaggatgaagccgtagataaaatggaggatgatatgtttttgcgttgtattgaa
gctaacatgttgtctgacatgacgttacaaggcattgaagctatcggtaaagtatatatg
catttgccacaaactgacagcaaaaaaaggattattataacggaaactggggaattcaaa
gccattggagagtggttattagaaacagatggtacagcgatgatgaaagttcttagcgaa
agagatgtagatcctgttcgaacatacagcaatgacatatgcgaaatttttcaagtattg
ggtatagaggctgttcgtaaatcagttgaaaaagaaatgaatgctgtacttcaattttat
ggactttacgtaaattaccgacatttagctcttttatgtgacgtaatgacagctaaggga
catctaatggctatcactcgtcatggtatcaacagacaggatactggcgcacttatgaga
tgttcgtttgaagaaacggttgatgttttaatggatgcagcagcgcatgctgaaaatgat
ccaatgaggggtgtctcagaaaatattataatgggtcagctgcctaaaatgggaacaggt
tgcttcgacttactcttagacgcagaaaaatgtaaacatggcattgaaataccaagtaca
ttaggcccctctcttattggtggcacaggaatgtttttcggagctggagctacaccctct
atgactcctccagctactccatggggtccgtttaatacacctaagtactccccactagga
ccaatgagtggtatgactcctggtggaccaagtttttcaccatcagcagcttcggatgca
tcaggtttgtcaccgtactattctccagcgcattcgggatcctctccaagctctcccgga
ctttcgatgtcaccttttgtaccaatgtctccaagtgcatctccttcatattcaccaaca
agtccacattatgcaactagttctccaggtgcagcttctcctaattactctccagcatca
ccgcaatattctccagcaagcagaattgattcagctagtccaaaatattctccatcatct
ccaacgtataatcatccgtcacctgcatttcttggtacttccccgggatattcaccgtcg
tctaatctttactctacaaaatcgaatttcgcgacgtcaccggctttctcctcaggagcg
ggcggggcctccaatatgtattcgccaacaaatagtgtgtattctccatcttcaccaaat
tattctccgaattctcctagatattcacccagttcacctttttccccgtcttcaccatcc
tactctccaacgtcgcctgggtactccccaacgtccccatcatattcgccgtcttctcca
aaatatactccagcaacaccatcttattctcccacttctccgagctattccgcttcccca
agatattctccggtttcaccaacttacccaaggaccagtccaaaatattctcctgcaagt
cccacgtattcaccaccctctcccacttatgatggaagtccccagtatacacccgggagt
ccacaatattctcctacttctccaaaatattctccagaaagtcctatatattcaccacct
tctcctcgacattcgccggcaactcagtatagtccaagtggtagtttttcaacaagtcca
cattattcttctaatttatcttcttattcgccaaacagttcaaaatattccccaacaagc
ccaaccacttatactcctacccctcaccactattccccaagcagtacattgtattcccca
ccagcttctcaacgatatagtccaacaagccccgcctactctccaagcagtccatcatat
gaagaaccagattaa
DBGET
integrated database retrieval system
