Condylostylus longicornis: 129614121
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Entry
129614121 CDS
T09756
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
clon
Condylostylus longicornis
Pathway
clon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129614121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clon03019
]
129614121
03041 Spliceosome [BR:
clon03041
]
129614121
Messenger RNA biogenesis [BR:
clon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129614121
Spliceosome [BR:
clon03041
]
Complex B
Other components
Prp19-related factors
129614121
Complex C
129614121
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_7
RPN7
Mad3_BUB1_I
ARM_TT21
ARM_TT21_C
TPR_10
PPR
DHR-2_Lobe_A
DUF908
Myc_N
Motif
Other DBs
NCBI-GeneID:
129614121
NCBI-ProteinID:
XP_055384493
LinkDB
All DBs
Position
Unknown
AA seq
864 aa
AA seq
DB search
MNTGIELLEGDIPYEEEILRNAYSVKHWLRYIEYKSSGSYKSLNMVYERALKELPGSYKI
WNMYLRARRHQVRGKFITDPAYEDVNNCFERSLVFMNKMPRIWMDYCQFMTLQCKITRTR
KLFDRVLRSLPITQHNRIWPLYLDFIKKFDIPETAVVVYRRYLKLCPEDAEDFIEFLISI
DRLDEAAQRLANIIDDQNFVSKYGKSNHQLWNELCELISKNPDKVHSLNVDAIIRDGLRR
YTDQIGHLWNSLADYYIRSGLFDRARDIYEEAIETVNTVRDFTQVFDAYAQFEELSLNKK
MEDVGNDPDATEEDDADIELRLARFEYLMERRLLLLNSVLLRQNPHNVHEWHKRVKLYEG
KPNEIIDTFTEAVQTVQPKLAVGKLHTLWVEFAKFYENNDQLEDAELVFERATEVGYVKV
DELASVWCEWAEMEIRQENYEQALKLMQKATVMPKRKVAYHDDSETVQMRLYKSLKVWSM
YADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAYEKGIALFK
WPNVYDIWNIYLTKFLKRYGGSKLERARDLFEQCLENCPPEFAKSFYLLYAKLEEEHGLA
RHAMAVYERSTTAVQIEEMFSMYNIYIKKAAELYGLPKTRQIYEKAIEALPEENAREMCV
RFAEMEIKLGEVDRARAIYAHCSQMCDPRITAEFWQTWKEFEVRNGNEDTMREMLRIKRS
VQATYNTQVNMMAAQMVNTSLGTVADLAPGAQDGMRLLEAKAAEMAKHKPTESSQSISKP
APSNILFVRGETTGTGEKDKVINPDEIDIGDSDEDEDENDEEEMEVVENGEENVEVIGKV
GIEKQQIPAKVFGSLKKIDSDEDE
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaataccggaattgaattgctggagggagatattccatatgaagaagaaattcttcgt
aatgcatattctgttaaacattggcttcgctatatagaatacaaatcaagtggatcttat
aaaagtctcaatatggtgtatgaaagggcacttaaggaattaccaggatcatataaaatt
tggaatatgtacttacgggctcgaaggcatcaagtacgcggtaaatttattacggatcca
gcatatgaagatgtgaataattgtttcgagcgatccttagttttcatgaataaaatgcca
agaatatggatggattattgccaatttatgacgctccaatgtaaaattacaagaacccga
aaattatttgatagagttttgagatcacttcccattacacagcataatcgaatatggccc
ctttatttagattttataaaaaaatttgatattccagaaactgccgttgttgtttataga
agatatttaaaactttgtccagaagacgcagaggattttatagaatttttgataagtatt
gataggctagacgaagcagcccaaagattggccaatattatagatgatcagaatttcgta
tcgaaatatggtaaatcgaatcatcaattatggaatgaattatgtgaattgatctctaaa
aatcctgacaaagttcattcacttaacgtcgatgcaattataagagatggtcttaggcgc
tacactgatcaaattgggcatttatggaactctttggctgattattatatacgaagtggt
ttatttgatagagcgagagatatatacgaagaagcaatagaaactgtaaatacagtacga
gatttcacccaggtttttgatgcttacgctcaatttgaagaattatctctaaataaaaaa
atggaagatgtaggaaatgatccggatgcaacagaagaagatgatgcagatattgaatta
cggttagctcgatttgaatatttaatggaaagacgactgttgctcttaaatagcgtgcta
ttaagacaaaatccacataatgttcacgaatggcacaagcgagtaaaattatatgaagga
aaaccaaatgaaataattgatactttcactgaagctgttcaaacagttcagcctaaatta
gctgttggaaagctgcatactctatgggttgaattcgctaaattttatgagaataatgat
caactagaggatgctgaattagtttttgaaagagcaacggaagtaggatatgtcaaagtt
gatgaattagcttcagtatggtgtgaatgggctgaaatggaaataaggcaagaaaattat
gagcaagcactgaaattaatgcagaaagccactgtaatgcctaaacgaaaagtagcgtat
catgatgattcagaaacggttcaaatgagattatacaaaagtttgaaagtttggtccatg
tatgctgatttagaagaaagcttcggaacttttaaaacttgcaaagcagtttatgataga
attatcgacttaaaaatttgtactccacaaattattattaattatgggttgtttttagaa
gagcataattattttgaggaagcatttagagcgtatgagaaagggattgcactatttaaa
tggccaaacgtgtatgatatatggaacatttacttgacaaaatttttaaaaagatatggt
ggatcaaaattagaaagggcaagagatttatttgaacaatgtttggaaaattgtcctcca
gaatttgcaaaatcattttaccttctctatgcaaaattagaggaagaacatggtttggct
agacatgcgatggcggtttatgaacgatcaacaacagctgttcaaattgaagaaatgttc
agtatgtataatatttatattaaaaaagcggccgaactttatggcttgcctaaaacacga
caaatttatgaaaaagccattgaggctctgcctgaagaaaatgctagggaaatgtgtgtt
cgttttgctgaaatggaaattaaattaggagaagttgatagggctagagctatatatgcc
cattgcagtcaaatgtgtgatccacgaataacagcagaattctggcagacatggaaagaa
tttgaggtacgtaacggtaatgaggataccatgcgtgaaatgttaagaattaaacgtagt
gtacaagctacgtataatacacaagtaaatatgatggcagctcaaatggttaatacttct
cttggaactgtagcagatttggcgcctggtgcacaagatggaatgcgattattggaagct
aaagcagcagaaatggcaaaacataaaccaacagaatcctctcaatctataagcaaacct
gcaccaagtaatattttgtttgtacgaggggaaactactggaactggtgaaaaagataaa
gtaattaatccggatgaaattgatattggagacagtgatgaagatgaagatgaaaatgac
gaagaagaaatggaagttgttgaaaatggtgaagaaaatgttgaagttattggaaaagtt
ggaatagaaaaacaacaaattcccgcaaaagtttttggtagtcttaagaaaattgacagt
gatgaagatgaataa
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