Clostridium sp. OS1-26: RCG18_05375
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Entry
RCG18_05375 CDS
T11102
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cloo Clostridium sp. OS1-26
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cloo03009
]
RCG18_05375 (rlmD)
Enzymes [BR:
cloo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RCG18_05375 (rlmD)
Ribosome biogenesis [BR:
cloo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RCG18_05375 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_25
PrmA
Methyltransf_15
TRM5-TYW2_MTfase
MTS
Methyltransf_11
UPF0020
Methyltransf_4
PCMT
Methyltransf_12
Ubie_methyltran
N6_N4_Mtase
Methyltransf_32
FtsJ
RrnaAD
TPMT
Methyltransf_24
Methyltransf_23
PDGF
CdiI_ImmP
Motif
Other DBs
NCBI-ProteinID:
WML36150
LinkDB
All DBs
Position
complement(1088083..1089507)
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AA seq
474 aa
AA seq
DB search
MVGENMGKSIPIEKNKEYILDITGMGYEGEGVGKINDFTVFVNGALLNERVRIKIVKVNK
NFAFGKLLEVVESSKERVEPVCSTYQRCGGCQLQHYSYDAQLRFKRNRVKDCIERIGKLH
VVEYDKEKEDSDVIIHSTIDMNNPYRYRNKVQLPVGKKGNDIVIGFYAPRSHEIIHMDAC
NIQDETADEVVKLVKTWIQKYNIETYNEEMHSGIIRHIMIRKAFRTKETMVVVVTKTKDI
PHADALVKLITENITDIKSIIQNVNDKKTNVILGQHCKTLWGNDTISDYIGDFRFNISPL
SFFQVNPIQTEVLYNKALEYANLTGNETVFDAYCGTGTISLFLSQNAKKVYGVEIVPEAI
ENAIENAKQNNVSNVEFIVGQSEKVIPELIEKGIKADVVVVDPPRKGCEKVLLDAIAKMQ
PKRIVYVSCAPGTLARDLGIMDELGYKTVEVQPVDMFPQTAHVECVVKIEALNT
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggtaggtgaaaatatgggtaaatctattcctatagaaaaaaataaagaatacatatta
gatataactggtatggggtatgaaggtgaaggcgtaggcaagattaatgactttacagtg
tttgtaaatggtgctttgttaaatgaaagagttagaataaaaatagtaaaagtaaataaa
aattttgcatttgggaagctgttagaagttgttgagtcatcaaaagagagagtggaacct
gtctgtagtacttaccaaagatgcggaggatgtcaacttcagcattattcttatgatgca
cagttaagatttaagagaaatagggtaaaagactgtatagagagaataggtaagttgcat
gttgtagaatatgataaagaaaaagaagatagtgatgtaattatacatagtacaatagat
atgaataatccttataggtatagaaataaggtacagctgcctgttggaaaaaaagggaac
gatatagtaataggattctatgcgcctagaagccatgagataattcatatggatgcttgt
aacattcaagacgaaactgctgatgaagtagttaaattagttaaaacctggattcaaaaa
tacaatatagaaacttataatgaggaaatgcatagcggaattataagacacataatgata
agaaaagcttttagaacaaaggaaactatggttgtagtagtaactaaaactaaagatatt
ccacatgcagatgctcttgtaaaactaattacagaaaatataacggatataaagagcatt
atacagaatgtaaatgataaaaaaacaaatgttattctagggcagcattgtaaaacctta
tggggaaatgatactataagtgattatattggagactttagatttaacatatctcctctt
tccttttttcaagtaaatccaatacaaactgaagtgctttataacaaagctttagaatat
gcaaatttaacaggtaatgaaactgtattcgatgcttattgtggaactggaacaatttcc
ttatttttatcacagaatgcgaagaaagtctatggagttgaaatagttcctgaagctata
gaaaatgctatagaaaatgccaaacaaaataatgttagtaatgtagagtttattgtagga
caatctgaaaaagttattcctgaactaatagaaaaaggcataaaagccgatgttgtggtt
gtagaccctccaagaaaagggtgcgaaaaggtgcttttagatgcaatagctaaaatgcaa
ccaaagagaatagtatatgtatcttgtgccccaggaacactagctagagatttgggaata
atggatgagttgggttataaaactgtagaagttcaaccagtagatatgtttccacaaacc
gctcacgttgagtgtgttgtgaagatagaggcattgaacacttaa
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