Clostridium sp. OS1-26: RCG18_11390
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Entry
RCG18_11390 CDS
T11102
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cloo Clostridium sp. OS1-26
Pathway
cloo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
RCG18_11390
09124 Replication and repair
03420 Nucleotide excision repair
RCG18_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cloo03021
]
RCG18_11390
03036 Chromosome and associated proteins [BR:
cloo03036
]
RCG18_11390
03400 DNA repair and recombination proteins [BR:
cloo03400
]
RCG18_11390
Enzymes [BR:
cloo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
RCG18_11390
Transcription machinery [BR:
cloo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
RCG18_11390
Chromosome and associated proteins [BR:
cloo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
RCG18_11390
DNA repair and recombination proteins [BR:
cloo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
RCG18_11390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
WML37161
LinkDB
All DBs
Position
2331853..2334282
Genome browser
AA seq
809 aa
AA seq
DB search
MIKNEKRVDFMQINEIKISVRNLVEFVLRSGDLDSRFTGSSRALEGTKAHQKIQKEYKDK
FSKEKQIPIDELVNNKSIKKEYFAEVVLKHNIEYKDFLFIVEGRADGIIIEGDNFIIDEI
KTVTRPLETVDEDYNYLHWAQAKCYAYIYALQNGLPNIDVQITYYNINDNETKKLIQNFN
INDLESFFNDLLEKYYFWANLIKDWNIKRTNSIKNIDFPFNSYRKGQRELAVAVYGTIKE
GKNIFAQAPTGIGKTISTLFPSIKAMGENLTSKVFYLTAKTITRSVAEEAIKLMQDKGLE
LKSVTLTAKDKICFKEKSSCNPEECEFAKGHFDRVNNALKEVLSKENIMDRETIIGYSRE
FNVCPFEFSLDLALLADCIICDYNYAFDPRVYLRRFFDNDENYVFLIDEAHNLVDRARDM
FSAELYKSKFLELKKVMKNKEPKIYKALDKVNSYMLKLKKLYKNPHIQKNGLEDIYPLLR
KLVSESEQWLTQNNKIEGHEQLLELYFNILTFIRISEFYNDAYVTYIEEQDNDIKIKMFC
LDPSSLLYDRVRQAKASIFFSATLTPISYFKDMLGGCDNDYILRLQSPFSTDNRAILIGD
RVPTRYKYREKSYSTIVQYIKAIVSSKKGNYIVFFPSYKYMKDVYRELKEQYPNIKTLIQ
DSSMKEEERELFLSEFKENNEETMIAFAVLGGIFSEGIDLKYDRLIGAIIVSVGIPQVCL
ERDIIMDYFNKENDKGFKYAYMYPGMNKVLQAAGRVIRTETDKGVIILVDDRFSDSEYKK
LFPKEWYPNLGVRSVKDIENNLKGFWGKY
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgattaagaatgagaaaagagttgattttatgcaaatcaatgagataaaaatttccgta
agaaatttagtagaatttgttttaagaagtggagatttggatagcagatttacgggaagt
agtagggcactagagggaacaaaagcccatcaaaaaatccaaaaagaatacaaagataaa
ttttctaaagaaaaacaaattcctatagatgaacttgtaaataataaaagtataaaaaag
gaatattttgctgaggtagtattaaagcataatattgaatataaggattttttatttata
gttgaaggtcgtgcagatggaataataatagaaggagataattttattatagatgaaatt
aaaactgtaacaagacctttggaaactgtagatgaggattacaactatctccattgggct
caagccaaatgttatgcttacatatatgccctgcaaaatggtttgccaaatatagatgta
cagatcacttactataacataaatgataatgaaactaaaaagctgatacaaaattttaat
attaatgatttagaaagtttttttaatgatttattagaaaaatattatttctgggctaat
ttaataaaagactggaacataaaaagaactaattcaataaaaaatatagattttccattt
aatagttatagaaaaggacaaagagaattagctgtagcagtatatggaactataaaagaa
ggaaaaaatatttttgcacaggcaccaacaggaataggtaaaaccatatctacattgttt
ccttctataaaagctatgggtgaaaatttaacttcgaaggtcttttatttaactgctaaa
acaataacaagaagtgtagcagaagaagctataaagctaatgcaagataaagggctagag
ttgaaatcagttactttaactgctaaagataaaatatgttttaaagaaaaatcatcctgt
aatccagaagaatgtgaatttgccaaaggacattttgatagagtaaataatgcattaaag
gaagttttatcaaaagagaatattatggatagagaaacaataataggatactctcgtgaa
tttaatgtttgtcctttcgaattttctctagatttagctctattagcggattgtatcata
tgtgattacaactatgcttttgatcctagggtatatttaaggagattttttgataatgat
gagaattatgtttttttgatagatgaggcccacaatttggtagatagagctagagatatg
ttttcagcagagctttataagagtaaatttttagaactaaagaaggtaatgaagaataag
gaacctaaaatatataaagctttagataaagttaactcttatatgttaaaattaaagaaa
ttatataaaaatcctcatattcaaaagaatggcttagaagatatttatcctttactaaga
aagcttgtttcagaatcagaacagtggcttactcaaaataataaaatagaaggacatgaa
cagttgttagaattatattttaatatattgacctttataagaatatcagagttttataac
gatgcatatgttacttatatagaagaacaagataacgatattaaaataaaaatgttttgt
ttagatccatcgtcattactatatgatagagtaaggcaagcaaaagcctcaatatttttt
tcagcaacgctgactcctataagttattttaaggatatgttaggtggatgtgataatgat
tatattttgaggttacaatccccgttttcgacagataatagagcaatattaattggagat
agagtaccgacaagatataaatatagagaaaaaagttactcaacaattgttcagtatatt
aaagcaattgtaagtagtaaaaaagggaattatatagtgttttttccttcttacaagtat
atgaaagatgtttacagagaattaaaagaacagtatccgaatattaagactttaattcaa
gatagctctatgaaagaagaagaaagagagttatttttaagtgaatttaaggaaaataat
gaagaaactatgatagcttttgcagtacttggaggaatattttcagaaggtatagattta
aaatatgataggttaattggggctattattgtaagtgttggaattcctcaagtatgcttg
gaaagagacataattatggattattttaataaagaaaatgataaaggatttaaatatgct
tatatgtatcctggaatgaacaaagttttacaagcggcaggtagagttattagaacagaa
actgataaaggtgttataattcttgttgatgatagattttcagattcagaatataaaaag
cttttccctaaagaatggtatcctaatttaggcgttagaagtgttaaagatatagaaaat
aatcttaaaggtttttggggaaaatactaa
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