Clostridium sp. OS1-26: RCG18_12400
Help
Entry
RCG18_12400 CDS
T11102
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cloo Clostridium sp. OS1-26
Pathway
cloo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCG18_12400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cloo03019
]
RCG18_12400
03009 Ribosome biogenesis [BR:
cloo03009
]
RCG18_12400
Enzymes [BR:
cloo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RCG18_12400
Messenger RNA biogenesis [BR:
cloo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RCG18_12400
Ribosome biogenesis [BR:
cloo03009
]
Prokaryotic type
rRNA helicases
RCG18_12400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
CMS1
ResIII
DUF2278
Motif
Other DBs
NCBI-ProteinID:
WML37337
LinkDB
All DBs
Position
2542944..2544515
Genome browser
AA seq
523 aa
AA seq
DB search
MKEMKFSDLGLNDDILKAIDGMGFEEPSNIQAEVIPVILEGFDVIGQAQTGTGKTLAFGA
PVLSKSNGSQGKISSIILTPTRELAIQVNDELVRVSKYSRIKLLPVYGGQPIERQIKALR
KGIDMVVGTPGRVLDLIRRNVIDLSGVKFLVLDEADEMLNMGFIDDIESIIQECGSDRQT
LLFSATMPNEIKKLAKRYMKSDAKHISIVKNAMTVSTINQYYYEIKQKDRFESLCRILDV
DEPATAIIFCKTKRGVDELVESMQARGYNVEGMHGDMSQNQRMNTLRKFKEGNLEFLVAT
DVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRANKEGIAYTLVTAREYMTLKQIEK
VTKSKIKRKEIPSIDDIFHSKYKNILNRVKETLEQEDYKKFVPLAAELDEEFNLVDVAAA
LMNIVYGKEISFDYTEDRIGGESNYVRLFLTVGRMDRVNPKEMLRFFGDNADVHKEDIGN
IDILEKFSFVDVAEGAVNSLIKNCSGKKLCGRKLKMEVSTGRR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaatgaagtttagtgatttaggacttaatgacgatatacttaaagccattgat
ggaatgggatttgaggagccttctaatatacaggctgaagttatacctgttattttagaa
ggttttgatgttattggccaggctcaaactggtacgggaaaaacacttgcttttggtgcg
ccagttttgagtaaatctaatggatcacaaggaaaaatatcaagtattatattaactcct
acaagagaattagctatacaggtaaatgatgaattagtgcgtgtgtctaaatattctaga
ataaaacttttacctgtttatggcggtcaacctattgaaagacagattaaagctctaaga
aaaggaatagatatggtggttggtactcctggtagagttttagatcttataagaagaaat
gtaattgatttaagtggtgttaagttccttgtgcttgatgaagctgatgagatgcttaac
atgggctttattgacgatatagaaagcattatacaagagtgcggaagtgatagacagaca
ttattgttttcagctactatgcctaatgaaattaaaaaactagcaaaaagatatatgaag
tctgatgctaaacatatatcaatagtaaaaaatgctatgacagtatctactattaatcag
tactactatgaaattaaacaaaaagatagatttgaatctttatgcagaattcttgatgta
gatgagcctgctacagcaattattttctgtaagactaaaagaggtgtagatgaattagta
gaatctatgcaagctagaggatataacgtagaaggtatgcatggagatatgagccagaat
caaagaatgaatacacttagaaagtttaaagaaggaaatctagaattccttgtggcaaca
gatgttgcagcaagaggtattgatgttgagaatgtaacacatgttatcaactatgaatta
ccacaagatatagaatcatatgtacacagaattggtagaacaggaagagctaataaagaa
ggaatagcatatactcttgttactgctagagaatatatgactcttaagcaaatagaaaag
gttacaaagagcaagataaagagaaaagaaataccatcaattgatgatatattccattca
aaatataaaaatatattaaatagagtaaaagaaactctagagcaagaggattataagaag
tttgttcctctagccgcagaacttgatgaggaatttaatcttgttgatgtagctgcagct
ttaatgaatatagtttacggtaaggaaataagctttgattatacagaagatcgtataggt
ggagaatcaaattatgttagattattcctaactgttggacgtatggatagggttaatcca
aaggaaatgcttagattcttcggtgataatgcagatgtacacaaagaagatatcggaaat
atagatatacttgaaaagttctcttttgttgatgtagctgaaggcgcagttaactcattg
ataaagaactgctcaggtaaaaagttatgtggaagaaaattaaagatggaagtatctaca
ggaagaagataa
DBGET
integrated database retrieval system
