Clostridium sp. OS1-26: RCG18_16890
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Entry
RCG18_16890 CDS
T11102
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
cloo Clostridium sp. OS1-26
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cloo03000
]
RCG18_16890
Transcription factors [BR:
cloo03000
]
Prokaryotic type
Helix-turn-helix
Other families
RCG18_16890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
PAS_8
AAA_2
GAF
AAA
PAS
Mg_chelatase
PAS_9
PAS_4
HTH_50
HTH_22
TIP49
MCM
HTH_28
HTH_30
PAS_7
HTH_17
Motif
Other DBs
NCBI-ProteinID:
WML33022
LinkDB
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Position
complement(3444831..3446795)
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AA seq
654 aa
AA seq
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MEKDTQNVKQYWLNFLKDKKIDDNLDADVSESWMRCRHINVDPFNSSIKQVSQQDLSIKL
KQNKELIDVAEPIMERLYNIVEGSGFVIVLTDKEGCIIKIIGDKEWPKSKELHLILGSLW
SEESIGTNAIGTALHLNKPIQIIGAEHYNVDNHCLTCSAAAIHNEDGELIGCINMSGNYS
KANSHTTGIVVSGAYSIERQFALIKSNKLLNVIFDSMSDGMLVLDKNFKITRANNTAAKI
LGVPIEEILNLSIDSILKNMDIIKNKLIIEKNYHNMDCSFFIRNKRLKCSMNAFPVIMNE
DMNGMVITFKDEGSVHKIVNSMAGFSASYKFEDIVTKDELMKKTIDLAKKASLTSCNILI
EGPSGTGKELFAQAIHNYSNRASGPFVAVNCASLPKELIESELFGYEKGAFTGATKDGHP
GKFELANGGTIFLDELGEMPLDMQSKLLRVLDNNKITRLGGTYEKVLNVRIIAATNRNLI
EEINDKNFREDLYYRLNVMNVKTIPLKYRPEDIEILANHFVQRLNLKTSGVFKYLDEKYL
KAIRAYHWPGNVRELRNVVERSYYLCESNNISDELLYDYIVKYKTSTKLHEHSIKKDILT
IDEFEKQNIEITIKKCNGDLLKAARILNMSRATIYRRVKKYGININKIQTDVLL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggatacacagaatgtaaagcagtattggttgaattttttaaaagataaaaag
atagatgataatttggatgcagatgttagtgaatcttggatgagatgtaggcatataaat
gtagacccctttaattcatctattaaacaggtttcacaacaagacctatctataaaatta
aagcaaaataaggaattaatagatgtagcagagcctattatggaaagattatacaatata
gttgaaggatctggatttgtaatagtacttacagataaagaaggctgcataattaaaata
ataggcgataaagagtggccaaaatctaaagaattgcatcttatattaggttcattatgg
agcgaggagtctattggaacaaatgctataggtacagctctgcatttgaataaacctata
caaataataggtgcagaacactacaatgtagataatcattgtttaacctgttcagctgca
gccatccataatgaagatggcgaacttattggatgtatcaatatgtctgggaactattca
aaggcaaactctcatactacaggtatagttgtttcaggtgcctactctatagaaagacaa
ttcgctcttataaaatctaataaattgttaaacgtaatcttcgattccatgtctgatggt
atgttggttttggataaaaactttaaaataacaagggctaacaatactgcagctaaaata
ctaggagtgcctatagaggaaatattaaacttaagtatagactctattttaaaaaacatg
gatataattaagaataaattaattatagaaaaaaattatcacaatatggactgtagtttc
tttattaggaacaaaaggctaaaatgcagtatgaatgcttttcctgtaatcatgaatgaa
gatatgaatggaatggttataacttttaaagatgaaggatctgttcataaaattgtaaat
agcatggctggcttcagcgcctcttataagtttgaagatatagtaactaaagacgagctt
atgaagaaaactatagatcttgctaaaaaggcatccttaactagctgtaatatattaata
gaaggcccaagtggtacaggaaaagaactttttgctcaagctattcacaattatagtaat
agagcaagcggtccctttgtagcggtgaattgtgcttctcttccaaaagaacttatagaa
agtgaactttttggatatgagaaaggtgccttcacaggagcaactaaggatggtcatcct
ggaaaatttgaattagctaatggcggaactatatttttagatgaactaggtgaaatgcct
cttgatatgcaatcaaaattattaagagttttagataacaataaaataacaagattaggc
ggtacctatgaaaaagttttaaatgtaagaataattgctgcaactaatagaaatttaatt
gaagagataaatgacaaaaactttagagaagacttatattatagattaaatgtaatgaat
gtaaaaacaatacctttaaagtatagaccagaggatattgaaatcttagcaaatcacttt
gtacaaagattgaacttaaaaacttcaggagtttttaaatacttagatgaaaaatactta
aaagctataagagcttatcattggccaggaaatgtaagagaattgcgaaatgtagttgag
cgttcctattacttatgtgaaagtaataacatatcagatgagcttttatacgattatatt
gtcaaatataaaacatcaacaaagcttcatgagcactctatcaaaaaagatattttgact
atagatgaattcgaaaaacaaaacattgagataactataaaaaaatgtaatggagattta
ctaaaggctgctcgcatattaaatatgagtagagctactatatatagaagagtaaaaaaa
tatggaataaatataaataaaattcaaacggatgttttattgtaa
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