KEGG   Clostridium sp. OS1-26: RCG18_17280
Entry
RCG18_17280       CDS       T11102                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
cloo  Clostridium sp. OS1-26
Pathway
cloo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cloo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RCG18_17280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cloo03019]
    RCG18_17280
Messenger RNA biogenesis [BR:cloo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RCG18_17280
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Anti-Pycsar_Apyc1 Lactamase_B_2
Other DBs
NCBI-ProteinID: WML33096
LinkDB
Position
3537127..3538791
AA seq 554 aa
MKNENCVRVIPLGGLGEIGKNITAIEYKDEIMVIDCGISFPEEDMYGVDLVIPDISYLLD
NKEKVKGIFLTHGHEDHIGSIPYFLKQLNVPIYGTRLTLGIVEIKLKEHGLLNSSELHAV
EPGDTVELENFKVEFIRNNHSISDSCCLAIFTPVGVILHTGDFKVDYTPIDDKVMDLKRI
SNLGSSGVLLLMADSTNVERSGHTISESSIGETLIKIFSKAEGRVIVATFASNIQRMQQI
VNASVQYGRKIAFSGRSMENISKVAMELGYLHIPEHYMISVDEIRNYPNEQITIITTGSQ
GEPMSALARIAFSTHKIIKLEPNDLIIISASPIPGNGKFISRVINELFKKGAEVIYEALE
EVHVSGHAYREELKLIHTLVHPKYFMPVHGEYRHLRHHSILAQKLGMESSNTFIMETGQV
LELSENEAKISGRVPTGIVLVDGLGVGDVGNIVLRDRRHLAEDGILTVVVTIEKETYNII
AGPDIITRGFIYVKESEPLINEAKEIVKKELDNCLENKVIEWYVLKSNMKKSLEKFLYEK
TKRRPVILPIIMEI
NT seq 1665 nt   +upstreamnt  +downstreamnt
gtgaaaaacgaaaattgcgtaagagttatccctttggggggacttggagaaattggcaaa
aacataactgcaattgaatataaagacgaaatcatggtaatagactgcggaatatctttt
cctgaggaagacatgtatggtgtagatttagtaatacctgatatatcatatctgttagat
aacaaagaaaaagttaaaggaatatttttaactcatgggcacgaagatcacataggctca
ataccatattttttaaaacagcttaatgtacctatttatggcacaagattgactttagga
atagttgaaataaaattaaaagagcatggtttactcaatagctctgagcttcatgcggta
gaacctggcgatacagtggagctagaaaactttaaggttgaatttataagaaacaatcac
agtatatcagattcctgctgtcttgctatcttcacaccggtgggagttatactacatact
ggagattttaaagtagattatacacctatagatgataaagttatggatttaaagcgcata
tctaatcttggaagtagcggagtattattgcttatggcggatagcacaaatgttgagcgt
tctggtcatacaatttcagaaagttctataggagaaacattgattaaaattttctcgaaa
gctgaaggaagggtaatcgtggctacatttgcctcgaatattcaaagaatgcagcaaata
gtcaatgcttctgtacaatatggaagaaagatagcctttagtggaagaagtatggaaaac
atatctaaggttgcaatggaactaggatacttgcatataccagaacattatatgatttct
gtagatgagattcgcaattacccgaatgagcagataactatcataactacaggtagtcaa
ggagagcctatgtcagctcttgccagaatagccttctctactcataaaataattaaactt
gaacctaatgacttaattattatatctgcatcaccaatacctggcaatggaaagtttata
tcaagagtaattaatgaactatttaaaaaaggagcagaggttatttatgaagcattagag
gaagtacacgtatccggccatgcttatagagaagagttgaaattaattcatacactagta
catcctaagtattttatgccagttcatggtgaatatagacatcttagacatcattcaata
ttagcacaaaagcttggtatggaaagttcaaacacttttattatggaaactggtcaggtt
ttagagctatcagaaaatgaagctaaaatttctggtagagttccgactggtattgttctt
gtagacggacttggagttggagatgttgggaatatagtgcttagagatagaaggcattta
gctgaagacggtattttaacagtagttgtaactatagaaaaagaaacctacaatatcatt
gcaggaccagatataatcaccagaggcttcatttacgtaaaggaatcagaacctctaatt
aatgaagcaaaagaaatcgtaaaaaaagaattggataattgcttagaaaataaagtaatt
gaatggtacgtattaaaatctaacatgaaaaaatctttagaaaaatttttatatgaaaaa
acaaaaagaagaccggttatacttccaataataatggaaatttaa

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