Clostridium sp. OS1-26: RCG18_17280
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Entry
RCG18_17280 CDS
T11102
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cloo Clostridium sp. OS1-26
Pathway
cloo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCG18_17280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cloo03019
]
RCG18_17280
Messenger RNA biogenesis [BR:
cloo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RCG18_17280
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
WML33096
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Position
3537127..3538791
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AA seq
554 aa
AA seq
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MKNENCVRVIPLGGLGEIGKNITAIEYKDEIMVIDCGISFPEEDMYGVDLVIPDISYLLD
NKEKVKGIFLTHGHEDHIGSIPYFLKQLNVPIYGTRLTLGIVEIKLKEHGLLNSSELHAV
EPGDTVELENFKVEFIRNNHSISDSCCLAIFTPVGVILHTGDFKVDYTPIDDKVMDLKRI
SNLGSSGVLLLMADSTNVERSGHTISESSIGETLIKIFSKAEGRVIVATFASNIQRMQQI
VNASVQYGRKIAFSGRSMENISKVAMELGYLHIPEHYMISVDEIRNYPNEQITIITTGSQ
GEPMSALARIAFSTHKIIKLEPNDLIIISASPIPGNGKFISRVINELFKKGAEVIYEALE
EVHVSGHAYREELKLIHTLVHPKYFMPVHGEYRHLRHHSILAQKLGMESSNTFIMETGQV
LELSENEAKISGRVPTGIVLVDGLGVGDVGNIVLRDRRHLAEDGILTVVVTIEKETYNII
AGPDIITRGFIYVKESEPLINEAKEIVKKELDNCLENKVIEWYVLKSNMKKSLEKFLYEK
TKRRPVILPIIMEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaacgaaaattgcgtaagagttatccctttggggggacttggagaaattggcaaa
aacataactgcaattgaatataaagacgaaatcatggtaatagactgcggaatatctttt
cctgaggaagacatgtatggtgtagatttagtaatacctgatatatcatatctgttagat
aacaaagaaaaagttaaaggaatatttttaactcatgggcacgaagatcacataggctca
ataccatattttttaaaacagcttaatgtacctatttatggcacaagattgactttagga
atagttgaaataaaattaaaagagcatggtttactcaatagctctgagcttcatgcggta
gaacctggcgatacagtggagctagaaaactttaaggttgaatttataagaaacaatcac
agtatatcagattcctgctgtcttgctatcttcacaccggtgggagttatactacatact
ggagattttaaagtagattatacacctatagatgataaagttatggatttaaagcgcata
tctaatcttggaagtagcggagtattattgcttatggcggatagcacaaatgttgagcgt
tctggtcatacaatttcagaaagttctataggagaaacattgattaaaattttctcgaaa
gctgaaggaagggtaatcgtggctacatttgcctcgaatattcaaagaatgcagcaaata
gtcaatgcttctgtacaatatggaagaaagatagcctttagtggaagaagtatggaaaac
atatctaaggttgcaatggaactaggatacttgcatataccagaacattatatgatttct
gtagatgagattcgcaattacccgaatgagcagataactatcataactacaggtagtcaa
ggagagcctatgtcagctcttgccagaatagccttctctactcataaaataattaaactt
gaacctaatgacttaattattatatctgcatcaccaatacctggcaatggaaagtttata
tcaagagtaattaatgaactatttaaaaaaggagcagaggttatttatgaagcattagag
gaagtacacgtatccggccatgcttatagagaagagttgaaattaattcatacactagta
catcctaagtattttatgccagttcatggtgaatatagacatcttagacatcattcaata
ttagcacaaaagcttggtatggaaagttcaaacacttttattatggaaactggtcaggtt
ttagagctatcagaaaatgaagctaaaatttctggtagagttccgactggtattgttctt
gtagacggacttggagttggagatgttgggaatatagtgcttagagatagaaggcattta
gctgaagacggtattttaacagtagttgtaactatagaaaaagaaacctacaatatcatt
gcaggaccagatataatcaccagaggcttcatttacgtaaaggaatcagaacctctaatt
aatgaagcaaaagaaatcgtaaaaaaagaattggataattgcttagaaaataaagtaatt
gaatggtacgtattaaaatctaacatgaaaaaatctttagaaaaatttttatatgaaaaa
acaaaaagaagaccggttatacttccaataataatggaaatttaa
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