Clostridium sp. OS1-26: RCG18_21105
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Entry
RCG18_21105 CDS
T11102
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cloo Clostridium sp. OS1-26
Pathway
cloo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCG18_21105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cloo03019
]
RCG18_21105
03009 Ribosome biogenesis [BR:
cloo03009
]
RCG18_21105
Enzymes [BR:
cloo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RCG18_21105
Messenger RNA biogenesis [BR:
cloo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RCG18_21105
Ribosome biogenesis [BR:
cloo03009
]
Prokaryotic type
rRNA helicases
RCG18_21105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
UvrD-helicase
LPD13
SWI2_SNF2
AAA_30
MRP-S22
Flavi_DEAD
YtxK_like
Motif
Other DBs
NCBI-ProteinID:
WML33807
LinkDB
All DBs
Position
4263630..4265075
Genome browser
AA seq
481 aa
AA seq
DB search
MVELNFKSLDISEEILKSLEMLGYKHPSEVQAQVIPLALKDKDIIVKSQTGSGKTGAFAI
PICEKIEIEENKPQVLVLTPTRELAIQVKEDINNIGRFKRIRSVAVFGKQPISEQTRQLK
QRIHVIVGTPGRTLDHIERKNIDLSDVKYLIIDEADEMLNMGFIEQVETVINALSRDRIT
MLFSATMPEEIERLCHNYMINPINIEINPESLTAEKIHQVYYEVENNKKFNLLNKLIYTE
RPDSCIIFCSTKDNVDSLTQRMQSRDYSCNKLHGGMLQKDRIDTIQKFKRGEFSFLIATD
VAARGIDVENITHIINYDIPMEKESYVHRIGRTARAGKQGSAITFVTPSEYRFLRDIEDY
IDLNIDKGEVPSEEAVEEGKNIFNKNARNKKSLKVDKSDKLNKEIMKLYINAGKKKKIRA
GDIVGAITSINGVTAENIGIIDIQDNFSYIDILDGKGRVVLDALQQTTIKGKNVRVQKAT
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggttgaattaaattttaaatccttagatataagtgaagaaatattaaaatctttagaa
atgcttggatataagcatccatcagaagtgcaagcacaagttataccgctagcacttaaa
gataaggacataatagttaaatctcaaacaggaagtggaaaaacaggggcttttgcaatt
cctatttgtgaaaagatagagatagaagagaataagccccaagtattagtgcttacacct
acaagagagcttgctatacaagtaaaagaagatataaataatatagggagatttaaaagg
ataaggagtgttgctgtttttggtaaacagccaattagtgaacaaacaaggcaattaaaa
caaagaattcacgttattgtgggaacaccgggaagaactttagatcatatcgaaagaaaa
aatattgatttaagtgatgtgaagtatctaataatagatgaagctgatgaaatgctaaac
atgggatttattgagcaagtagaaacagttataaatgctttatctagagatagaataact
atgctgttttctgcaacgatgccagaagaaattgaaaggttatgtcataattacatgatt
aaccccattaatatagagataaatcctgaaagtcttaccgcagaaaaaatacatcaggta
tactatgaagttgaaaataacaaaaagttcaatcttctcaataaattgatatatacagaa
aggccagatagttgtattattttctgcagtacaaaagacaacgtggacagtttaacacaa
agaatgcaaagcagggattattcttgtaataagctacatggaggaatgcttcaaaaggat
agaatagatacaattcaaaaatttaaaagaggcgagtttagtttcttaattgctacagat
gttgcagcaagaggaattgatgtagaaaatataacacatattataaattatgatatacct
atggaaaaagaaagttatgttcatagaataggaagaacggctcgtgctggaaagcaagga
agtgcaataacttttgtgactccaagtgaatatagatttttaagagatattgaggattac
attgatctaaatatagataaaggtgaagtaccttctgaagaagctgtagaggaaggaaaa
aatatctttaataaaaatgctagaaataagaaatcgttaaaagttgacaagagtgataag
ttaaacaaagaaatcatgaagttgtacataaatgctggaaaaaagaaaaaaataagagca
ggggatattgttggcgcaatcactagcataaatggggttacagctgaaaatatcggtata
atagatattcaagataacttctcttatattgatatattagatggaaagggtagagtagta
cttgatgcacttcaacaaactactataaaaggtaaaaatgttagggtgcaaaaagcgaca
aaataa
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