Clostridium sp. OS1-26: RCG18_21965
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Entry
RCG18_21965 CDS
T11102
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cloo Clostridium sp. OS1-26
Pathway
cloo03420
Nucleotide excision repair
cloo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RCG18_21965 (helD)
03430 Mismatch repair
RCG18_21965 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cloo03400
]
RCG18_21965 (helD)
Enzymes [BR:
cloo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RCG18_21965 (helD)
DNA repair and recombination proteins [BR:
cloo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RCG18_21965 (helD)
MMR (mismatch excision repair)
Other MMR factors
RCG18_21965 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
SLFN-g3_helicase
AAA_30
UvrD_C_2
DEAD
PhoH
ResIII
AAA_11
GPAT_N
nSTAND3
AAR2
Mg_chelatase
NACHT
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WML33962
LinkDB
All DBs
Position
4424988..4427279
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AA seq
763 aa
AA seq
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MSLNCEQMDLERRALKETREWINEEIEKIQQDDKQLRSKIDDLRKESKGKYSEELETKEK
LYAITHKNLQKYHESQDQPYFGRIDFREYRREKEAFYIGKFGLGDLENGEEKVIDWRSPI
ADLYYSGTFGESFYRAPMGVISGDLSLKRKFLVKNCELIDAFDEGINEIILKSSNEEGNA
LIDEYLRINLEQSVSSKLKDVVATIQKEQNDIIRAEKNNALIVQGSAGSGKTTVALHRLA
YLLYKYKEKLSGEDILVIAPNKLFLDYISDVLPDLGVDNVKQNTFEGIALDVLGIKSKVY
SKDKKLSEILEGKNEEDSKLIINSSKLRGTIDFKGLIDRYIGYMEAKDLEIEDIKVEHYT
LFEKEEIQRLYAKDMMHLSLNKRKDEIKRYFNLKIDEKIKAILDKIDFSYEYQISRVKRT
MEDSADRRKKLIKLYDERDNKKDEIKIKSRKGFDDYFNEWKQVDTRKIYINFLNNEDVFK
EVSAGKIPEALANNMREELNNNYEKGIIDSDDLAAMLYLKIKIEGVPEKFKYKHIVIDEA
QDYSIFQITVLKELVENKSLTIVGDVGQGIYYYKGIENWEKLINEVFNAEAAYVQLTQSY
RSTVEIMEFANKVLSKQKNKIKPAIPVLRHGKVPEVIEFKTNKEFCENIDEIVKEVESIN
KNSVAIIGRTYEECKKIKEHMKKYSKFDWDLIKDTDKNLKLKKIIIPSYMTKGLEFDCSI
LYNCNEENYSDKELDKKILYVALTRALHLEYVFYNGKKSKLIE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttaaactgtgaacaaatggatctagaaagaagagcccttaaagaaactagagaa
tggattaatgaagaaattgaaaaaattcaacaggatgataaacaattaagaagtaaaata
gatgatttaagaaaagaatcaaaagggaaatatagtgaggagctggaaactaaagaaaaa
ctttatgcaataactcataaaaatcttcaaaaatatcacgaatcgcaagatcaaccttac
tttggaaggatagactttagggaatatagacgagaaaaagaagctttttacataggaaag
tttggattaggagacttagaaaatggagaagagaaggtaatagattggagatcgcctata
gcagatctatattatagtggtacctttggagaatccttctatagagcgcctatgggagta
ataagtggggacctcagtctgaaaagaaagtttcttgtaaagaattgtgaactgatagat
gcctttgatgaagggataaatgaaataattttgaagtcctccaacgaagaaggaaatgca
ttaatagatgagtatttgagaataaatttggaacaaagtgtaagcagcaaattgaaagat
gttgtagctacaatacagaaggagcaaaatgatattataagagctgaaaaaaataatgct
cttatagttcagggttctgctggctcaggaaaaactacagtagcactacatcgactagca
tatttattatataagtataaggagaaacttagtggtgaggatatactagtcatagcgcca
aataagttatttctagattacatatctgatgtgctgcctgaccttggggtggataacgta
aagcagaatacttttgaagggattgctcttgatgtgttaggaataaaaagcaaggtatat
tctaaagataaaaagctttcagaaatactcgaaggaaagaatgaggaggattccaaactc
attataaacagcagtaaattaagaggtaccattgactttaaaggattgatagatagatat
ataggatatatggaagcgaaggatttagaaatagaagatataaaagttgaacattatact
ttattcgaaaaggaagaaatacagagactttatgcaaaagatatgatgcatttgtcattg
aataagagaaaagatgaaataaagagatattttaacttaaaaatagatgagaaaataaag
gctattcttgataaaattgatttttcatatgagtaccaaatatctagagtaaaaagaact
atggaagacagtgcagatagacgaaagaaacttatcaaattatacgatgagagagataat
aaaaaagatgaaataaaaataaaatcaagaaaaggctttgatgattattttaacgagtgg
aagcaagtagatacaagaaaaatatatataaattttttaaataatgaagatgtttttaaa
gaagtatcagctggaaaaatacctgaagctttagcaaataacatgagagaggaactaaac
aacaattatgaaaaaggaataattgatagtgacgatttagctgctatgctgtacctaaaa
attaaaatagaaggtgtcccagaaaaatttaaatataagcacatagttattgatgaagct
caagattacagtatttttcagattactgtactaaaagagctagtggagaataaatctttg
actattgttggagatgtagggcaaggaatttattactataaaggtattgagaattgggaa
aagctcataaatgaagtcttcaacgctgaagctgcatacgtccagcttacacaaagttat
cgatcaactgtagaaataatggagtttgcaaataaagtgctttcaaaacaaaaaaacaaa
atcaaacctgcaatacctgtgttacggcatggtaaggttccagaagttatagaatttaaa
actaacaaagaattttgtgaaaatatagatgagatagttaaggaagtagaaagtattaat
aaaaacagcgttgcaatcataggcagaacttatgaagagtgcaagaagattaaggaacat
atgaagaaatacagcaaatttgactgggatttaattaaagatacggataaaaacttgaag
cttaagaaaataataataccatcttatatgactaaaggactagagtttgattgcagtata
ctgtataattgcaatgaagagaattatagtgataaggaattagacaaaaagatattatat
gtagctttaacgagagctcttcacttagaatacgtattttacaatggtaaaaagtcaaaa
ctaatagaataa
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