Clostridium sp. OS1-26: RCG18_28345
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Entry
RCG18_28345 CDS
T11102
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cloo Clostridium sp. OS1-26
Brite
KEGG Orthology (KO) [BR:
cloo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cloo03032
]
RCG18_28345 (topA)
03400 DNA repair and recombination proteins [BR:
cloo03400
]
RCG18_28345 (topA)
Enzymes [BR:
cloo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RCG18_28345 (topA)
DNA replication proteins [BR:
cloo03032
]
Prokaryotic type
DNA Topoisomerases
RCG18_28345 (topA)
DNA repair and recombination proteins [BR:
cloo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RCG18_28345 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Toprim_2
Zn_ribbon_GRF
Motif
Other DBs
NCBI-ProteinID:
WML35101
LinkDB
All DBs
Position
complement(5763488..5765626)
Genome browser
AA seq
712 aa
AA seq
DB search
MGQKLVIVESPAKAKTIGKYLGKNYVVEASMGHVRDLPKSQLGVDIDNEYNPKYITIRGK
GELLDKLKKEAKKSEKVYLATDPDREGEAISWHLAHILKLNEEEKCRIEFHEITKNAIKS
AIKEPREINVNLVNAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALRMICDREK
EILDFIPKEYWTVECALHKADTKKAFNVRLTTLGKKKIEINNKEEVDKIIKELENGEFIV
KSIKRTSKNKNPLPPFTTSTLQQDAYKKMNFATKRTMSIAQQLYEGIDIKGFGTVGLITY
MRTDSVRIATEAQESCKNFIINQYGEGYAPKEARNYKGKKNAQDAHEAIRPTHVEITPEI
AKASLKDEQYKLYSLIWNRFVASQMSSCIMDVTSINITNGDYGLKASGSIVKFDGFMKVY
EYSTDEEKEDINLPELSEDEKLIKKSIDGKQHFTQPPARFSEASLVKTLEENGIGRPSTY
APIISTLLERKYIEREKKTLKPTELGDIVNNILSEYFKQIVDSEFTAEMEEKLDNVEDGN
ANWNEVVGQFFTPLKDAIDIAEREVAKITIEDKVTDIQCEKCGRNMVIKHGRFGDFLACP
GYPDCKNTKPLVEELEVKCPKCSGKILVKKSKKGRKFYGCSNYPDCDFVSWFEPAAEKCS
VCGSMMVKKYSKSKGNYLECTNAECKNVEYKVEGENINNSVNDIENVNNNKV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaaaattagttatagttgaatcaccagcaaaggcaaaaaccataggaaaatat
ttaggtaaaaattacgtagtagaagcatctatgggacatgtaagagatcttcctaaaagt
caattgggagttgatatagataatgaatacaatcctaaatatataactataagaggtaag
ggagaattattagataaattaaaaaaagaagctaagaaaagtgaaaaagtatatttggca
acggaccctgatagagaaggagaagcaatttcatggcatttagcacatatacttaagcta
aacgaagaagaaaaatgcagaatagaatttcatgaaattaccaaaaatgcaataaaaagt
gctataaaagagccaagagaaataaacgttaatttagtaaatgctcaacaagctcgaaga
gttttagatagactagttggttacaaaattagtcctatactttggagaaaagtaaaatgg
gggctaagtgcaggaagagttcaatctgttgcattaagaatgatatgtgatagggaaaaa
gaaatattagactttatacctaaagagtattggacagttgaatgtgcacttcataaggca
gatactaaaaaagcttttaacgtcagacttactaccttaggtaagaaaaaaattgaaatt
aacaataaagaagaagtagataaaataataaaagaactagaaaatggagaatttatagta
aagagtattaaaaggacttctaaaaataaaaatcctttaccaccttttactacaagtact
ctacaacaagatgcttataagaaaatgaattttgcaacaaaacgaactatgtcaattgca
caacaactgtatgaaggtatagatataaaagggtttggaacagtaggtcttatcacatat
atgagaacggactctgtaagaatagccacagaagcgcaagaatcttgcaaaaattttata
ataaatcagtatggagaaggatatgctcctaaagaagcaagaaactataaaggcaaaaaa
aatgctcaggatgctcatgaagctataagaccaactcatgtggagattactcccgaaatt
gccaaagcaagcttaaaggatgaacagtataaattatattctttaatttggaatagattt
gttgcaagccaaatgtcttcatgcataatggatgttacatcaataaacataactaatgga
gactatggtcttaaggctagtggatctatagttaaatttgatggttttatgaaggtgtat
gaatactcaactgatgaggaaaaagaggatatcaatttacctgagctaagcgaagatgaa
aagcttataaaaaaatctatagatggaaaacaacattttactcaaccacctgctagattt
tcggaagcaagtcttgttaagacattggaggaaaatggtataggaagaccaagtacttat
gctcctattatatccacattattggaaagaaagtatattgaaagagaaaagaaaactcta
aaaccaacagaacttggagatatagtaaataatatacttagtgagtattttaaacagata
gttgattcggaatttacagctgaaatggaagaaaaattagataatgtagaagacggaaat
gcaaattggaatgaagttgtagggcagttttttacacctttaaaagatgccatagatata
gcggaaagagaagtagccaagataacaatagaagataaggttacagatatacaatgtgag
aagtgtggaagaaatatggttattaaacatggaagatttggtgattttcttgcatgccca
ggttatcctgattgtaaaaatacaaagccattagtagaagagttagaagttaaatgtcca
aagtgcagtgggaaaatattagtgaaaaagagtaaaaaaggaagaaaattctatggatgc
agtaattatccagattgtgactttgtaagttggtttgaaccagcagcagaaaagtgttca
gtttgcggcagtatgatggtaaaaaaatatagcaagtctaaaggaaattacttggaatgc
acgaatgctgagtgcaagaatgtggaatacaaagtagagggagaaaatataaataattct
gtaaatgacattgaaaatgttaacaataataaagtataa
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