Clostridium sp. AWRP: DMR38_06165
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Entry
DMR38_06165 CDS
T07742
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
clos
Clostridium sp. AWRP
Pathway
clos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMR38_06165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clos03019
]
DMR38_06165
Messenger RNA biogenesis [BR:
clos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DMR38_06165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AZV56216
LinkDB
All DBs
Position
1328965..1330632
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AA seq
555 aa
AA seq
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MRKEKDKVKVIPLGGLGEIGKNLTVIEYKNDIIVIDCGMSFPDADMLGIDIVIPDITYLK
KNIDRVRGIFLTHGHEDHIGALPYVLKEINVPVYGTKLTLGIVESKLREHNLNDVVKLKC
VKAKDVIKLDSMSVEFIRTSHSIADSTALAIHTPIGIIFHTGDFKVDYTPIDGSVIDFAR
LAELGKKGVILMLADSTNVERPGYTMSERTVGKTFQRFFSLAKNRIIVATFASNIHRIQQ
VITAAEKYDRKVAISGRSMENIMEVATNLGYIDIKKNTLINIDNINRYPGNRIVIITTGS
QGEPMSALSRMAASEHKKVNIIPGDTIIISANPIPGNEKLVSGVINQLFKKGAEVIYEAL
ADVHVSGHACQEELKLIHTLVKPKFFMPVHGEYRHLKQHKDLAISLGMPSNNVIIADNGD
VIEVSRDSIKKTGTVVSGQIFVDGLGVGDVGNIVLRDRRHLSQDGILTVVITIEKQTGTV
IAGPDIISRGFVYVRESEDLMEEAKELVRGALNECEEKHITEWASIKSNVKEVLRSFLYE
KTKRKPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtaaagaaaaagataaagtaaaagtcattccattaggtggtctaggtgaaatagga
aagaatcttacagtaatagagtataaaaatgacataatagtaattgattgtggcatgagt
ttcccagatgcagatatgctgggcatagatatagttatacccgatattacttatttgaaa
aagaatattgacagggtgagaggaatatttttaactcatggacatgaagaccatatagga
gcgttaccttatgtgctaaaagaaatcaatgttcctgtgtacggtacgaagttaaccctg
ggtattgttgagagtaagttaagagaacataacttaaatgatgtagtaaaattaaagtgt
gtaaaggcaaaggacgtaattaaattggatagtatgtctgtggaatttataagaactagc
catagtatagctgattcaactgcccttgcaatacacacaccaataggcattatatttcat
actggcgattttaaggtagattatacacctattgatggaagtgtaattgattttgccagg
cttgcagaactgggtaaaaagggtgtaatccttatgttagcagatagtactaatgtagaa
agaccggggtacactatgtctgaaaggactgtaggaaaaacttttcaaaggtttttttca
cttgcaaaaaatagaataatagtggctacatttgcctctaatattcatagaatacagcag
gtaattactgctgctgaaaaatatgacaggaaagttgcaatttctggaagaagtatggaa
aatataatggaggtagctaccaatttaggatatatagatattaaaaagaatactcttatt
aatatagataatataaatagatatccgggtaatagaatagttataataactactggaagt
caaggcgaacctatgtcggctctttcaagaatggcagcttccgaacataagaaagtaaat
attattccaggagatacgataataatttcagcaaatcctatacctggaaatgaaaaatta
gtttctggagttataaaccaactgtttaaaaagggagcagaagtaatatatgaagcattg
gcagatgtgcatgtttcaggtcatgcttgtcaggaagagttaaaattaattcatactctt
gtaaaacctaaattttttatgccagtgcatggagaatacaggcatttgaagcagcataaa
gaccttgccataagcctaggaatgccttcaaacaatgtaattatagcagataatggagat
gtaatagaagtttccagagactctataaagaaaacgggtacagtagtatctggacagata
tttgtagatggacttggagtaggagatgttggaaatatagttttaagagacagaagacat
ctttcacaagatggtatacttacagtagtaattaccattgaaaaacaaacgggtactgtt
attgctggtcctgatataatatccagagggtttgtatacgtaagggaatcagaagattta
atggaagaagcaaaggaacttgtacgaggtgcattaaatgaatgtgaggagaaacacatt
actgaatgggcaagtataaagtcaaatgtaaaagaagtcctcagatcattcttatacgaa
aagacaaagagaaaaccaatgatattacctataattatggaaatatag
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