Clostridium sp. AWRP: DMR38_12390
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Entry
DMR38_12390 CDS
T07742
Name
(GenBank) PAS domain S-box protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
clos
Clostridium sp. AWRP
Brite
KEGG Orthology (KO) [BR:
clos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clos03000
]
DMR38_12390
Transcription factors [BR:
clos03000
]
Prokaryotic type
Helix-turn-helix
Other families
DMR38_12390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
PAS_8
MimR_N
AAA_PrkA
GAF
PAS
AAA_2
PAS_9
Cache_WalK
PAS_4
Nup54_a-b
AAA_5
HTH_30
HTH_50
AAA
nSTAND3
NB-ARC
RsgA_GTPase
AAA_16
AAA_3
Motif
Other DBs
NCBI-ProteinID:
AZV57341
LinkDB
All DBs
Position
complement(2721854..2723749)
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AA seq
631 aa
AA seq
DB search
MNAAICKLGNAVVSKPYIEHSHRRCKEFSIDSHQVFSKKIIHDAELQKRFAANRNLILTA
APYMEQLINFVKGFNFFVLLTDGEGCILNALGDEKILEEAFSLKMIPGAFMNEENIGTNA
MSVVIKSKLPVQISGDDHFINAYHRWTCSAAPIKDNKGKLIGVLNLTGYIEFVHSHTLGM
VIAASNAIEEMLKVEEYNKIQDMNYKHIKNIFNSSPVAIITSDINGKIKICNKKAQDMFG
IRGNKLETNNMEDIIENWNNIKTPIYLGESTSKETIMVALRNKIQYQVTTSSIYNCDDDN
IEIVYVFEKLKKVNKKNNGQAYYTFGKIMGQDENFTKVVNYAKKISDSKSTILIMGESGT
GKEVFAQSIHNYSRRVDGPFVALNCGAIPKQLIESELFGYEEGAFTGAKKGGNLGKFELA
DGGTIMLDEIGEMPLDMQTKLLRVVQEGVITRIGSSKFIPVDVRIIAVTNRDLKKEVEAG
RFRKDLYYRLNVLPLFLPPLRERKRDIPLLIQHFVKNIAQKLNKKEPVISEEYLKKMINY
NWPGNIRELENLVELIINTESIPAGYFTEEDCDNEVLVDISDECLKLDYMEKEHVIKVLK
KFKGNITHSAKALGIRRNTLYSKIKKYNIQM
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcagctatttgtaaattgggcaatgcagttgtatctaagccgtatatagaacat
tcacatagaagatgtaaagagttcagtattgattcacaccaggtatttagtaaaaaaata
atacatgatgctgaattacagaaaagatttgcagctaacagaaatttaatattgactgca
gcaccttatatggagcagttgattaattttgtaaaaggatttaatttttttgtattactt
acagacggagaaggatgcatattaaatgcattaggtgatgaaaaaatactcgaagaagcc
ttttctttaaaaatgataccgggagcttttatgaatgaagaaaatattggaacaaatgct
atgagtgtagttataaaaagtaagctgccagttcaaatttctggagatgatcattttatt
aatgcatatcataggtggacgtgttctgcggcacctataaaagataataaaggaaaactt
ataggtgtattgaatcttactggatatattgagtttgtacattcccatacccttggtatg
gttatagcagcgtcaaatgctatagaagaaatgcttaaagtagaagagtacaataagatt
caagatatgaattacaagcatataaaaaatatatttaattccagccctgttgctataata
acctcggatataaatggcaagataaaaatttgcaataaaaaggcacaggatatgtttggc
ataaggggtaataagttagagacaaacaatatggaagatattatagaaaactggaataat
ataaaaacacctatatatttaggagaaagtacttcaaaagaaacaattatggttgcacta
agaaataagattcagtatcaagtaactactagttcaatatacaattgtgatgatgataat
attgagatagtttatgtttttgagaaattaaaaaaggtaaataaaaaaaataatggccag
gcttactatacttttggtaaaataatgggtcaggatgaaaactttacaaaagtagtaaat
tatgcaaaaaagatttcagatagtaaatcaactatacttataatgggggaaagtggtacg
ggaaaagaagtgtttgcacaatcaattcataattacagcagaagggtagatggaccattt
gtagctttaaattgtggtgccatccctaaacagcttatagagtcagagctttttggatat
gaagaaggagcttttacaggagccaaaaagggaggcaaccttggaaaatttgaattggca
gatggcggaactataatgctggatgaaattggagaaatgccccttgatatgcagacaaag
ctcctaagagttgtacaggaaggcgtaataacgagaattgggagctcaaagtttatacct
gtagatgtaagaattatagctgtgacaaacagagatttaaaaaaagaagtagaagctgga
agatttagaaaagatttatattatagattaaatgtgctgcctttattcttacctccactt
agagaaagaaagagggatataccccttcttattcaacattttgttaagaatatagcacaa
aagttaaataaaaaggagccggttatatcagaagaatacttgaagaaaatgattaactat
aactggcccgggaatataagagaattggaaaatttggttgaactaattataaacactgaa
tccataccagcaggttattttacggaagaagactgtgataatgaggtacttgtggatatt
agtgatgagtgtttaaagctagattatatggaaaaagaacatgtaattaaggtattgaag
aagtttaaggggaatataacccattcagcaaaagcacttggtataaggagaaatactcta
tacagcaagataaaaaagtataatatacaaatgtaa
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