Clostridium sp. AWRP: DMR38_17785
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Entry
DMR38_17785 CDS
T07742
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clos
Clostridium sp. AWRP
Pathway
clos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMR38_17785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clos03019
]
DMR38_17785
03009 Ribosome biogenesis [BR:
clos03009
]
DMR38_17785
Enzymes [BR:
clos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DMR38_17785
Messenger RNA biogenesis [BR:
clos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DMR38_17785
Ribosome biogenesis [BR:
clos03009
]
Prokaryotic type
rRNA helicases
DMR38_17785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
NDK
Arena_ncap_C
Motif
Other DBs
NCBI-ProteinID:
AZV58289
UniProt:
A0A3T0M0G1
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All DBs
Position
3817878..3819455
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AA seq
525 aa
AA seq
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MENINFSDLNLDPKVLQAIDNMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGA
PMLSKITTKSKHISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLK
RGVDVVVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKAANSDRQT
LLFSATMPDQIRKLSSRYMKSNIKCIKIAKNTLTVEKTKQYYYEIKQKDRFESLCRILDV
DEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVAT
DVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEK
FTKSKIRRKEIPTVDDIYEAKYKNIEEQVRNIISEDNYKNFIPIATELDEEYNLVDVAAA
LMKIIFDKELSFDYKENSLTVDEKDVRLFLSIGRMDNLTPRKLLKFISETSSVEAYEIGD
IDILNKFTFINVPERVSSIILKKTNGKKLQGRRVSVEVAKSKKSH
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatattaattttagtgatttaaatttagatcctaaggttcttcaagcaattgat
aatatgggatttgaagaaccatctcaaattcaagctgaatcaatccctgtaatactagat
gggaatgatgtaatcggtcaggcacagacaggtacaggaaagactttagcttttggagca
cctatgttaagcaaaataactaccaaaagtaaacacatctcagctcttatagttactccc
acccgagaacttgcaattcaagtaaatgatgagttgtccagaattgctaaattcaaaaaa
gtagccctattacctatatacggtggtcaacctatagacagacaaattagatctttaaaa
agaggtgtagatgtagtagtaggcacccctggaagaatacttgatcatataaagagaaaa
actttagatcttagcaatatagaatttttaatattagatgaagcagatgaaatgttggat
atgggttttatagaagatatagaaaacataataaaagccgcaaattctgacagacagaca
ttgctgttctctgctactatgccagatcaaataaggaagttatcttccagatatatgaag
tcaaatattaagtgcataaaaatagctaaaaacacattgactgtagaaaaaacaaaacaa
tattactatgagataaagcaaaaagatagatttgaatctttatgtagaattctagatgta
gatgaaccttcaagtgctataatattttgcaaaactaaacgtggagtagatgaattagta
gagggtttgcaggctagaggatacaatgtagaaggtatgcacggtgatatgggacaaaac
cagagattaaatacccttagaaagtttaaagaaggttcccttgaattcctagttgccaca
gatgtagctgcaagaggtatagacgtagaaaatgtttcccacgttataaattatgacctc
ccacaggacacagaatcttatgtccatagaattggaagaaccggaagggcaaacaaagaa
ggtattgcctattccttagtaacacctagagaatacatacttttaaagcaaatagagaag
tttaccaagagtaagataagaaggaaagaaattcctacagtagatgatatctatgaagcc
aagtataaaaatatagaagagcaagttagaaacattatatctgaagacaattataaaaat
tttattcctatagcaactgaattagatgaagagtacaatctagtagacgtagcagctgcc
cttatgaaaataatttttgacaaagaattaagctttgattataaggaaaattccttaact
gtagatgaaaaagatgttagattattcctctccataggtagaatggataatttaactcct
agaaaacttttaaaatttataagtgaaacttcttcagttgaagcctatgaaataggtgat
atagatatactaaataaatttacatttataaatgttccagaaagagtatcttctattata
ttgaaaaaaactaatggtaaaaaacttcagggaagaagagtttccgttgaagtggctaaa
agtaaaaaatctcattag
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