Clostridium sp. AWRP: DMR38_19490
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Entry
DMR38_19490 CDS
T07742
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
clos
Clostridium sp. AWRP
Pathway
clos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMR38_19490 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clos03019
]
DMR38_19490 (rnr)
03016 Transfer RNA biogenesis [BR:
clos03016
]
DMR38_19490 (rnr)
Enzymes [BR:
clos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DMR38_19490 (rnr)
Messenger RNA biogenesis [BR:
clos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DMR38_19490 (rnr)
Transfer RNA biogenesis [BR:
clos03016
]
Prokaryotic type
tRNA degradation factors
DMR38_19490 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
S1CSD-TOTE-2
CSD
OB_HELZ2
S1_RRP5
WHD_MCM8
TcfC
Motif
Other DBs
NCBI-ProteinID:
AZV58590
LinkDB
All DBs
Position
complement(4173016..4175154)
Genome browser
AA seq
712 aa
AA seq
DB search
MNIKEVIINFMEEQAYKPMNIRELEGIFSVTKAEAKDFKKVLDDLEKEGLVVKTRRKRYG
IPDRMGLVTGKFQGHQKGYGFVIPENEGADVFVPSSYLNGAMNGDKVVVKITKMEDKGKK
CEGEIIRVLERANKVVIGTFEDSTNFGFVVPEEKRIYQDIFIPKECRKNAQTGDVVVAEI
TEWPEKRRNPEGKIINILGKKGEKGIDILTIIKKNNLPEEFPIKVQQYVENIPEEIPKEE
YDRRTDLRDLLTVTIDGEDAKDLDDAISLSKLPNGNYSLGVHIADVSNYVREKNPLDKEA
LKRGTSVYLIDRVIPMLPKKLSNGICSLNPNTDRLTLSCLMEIDKTGKVVQHNVVESVIR
SNERMTYTDVTKILRDKDAETMEKYSYLVDTFNLMEELCKILNKRRMTRGAIDFDFQECK
IILDDLGVPVKIEPYERGISNRIIEEFMLVCNETIAEHMFWTNLPFVYRIHEDPDEEKLM
HFNEFVHNLGYVIKWGQEVHPKALQDIVEKVKGKKEEIVVSTLLLRSMKQARYSSECVGH
FGLAARYYCHFTSPIRRYPDLIIHRIIKEFINGRLTDNRIKTLVKEVDYAAKQSSEMERV
AQDAEREVDDLKKAEYMSKRIGEEFEGIISSVTNFGMFVELPNTIEGLVHMSTLEDDYYV
YDEKHLSLVGERNRNIYKLGDEIKIRVLKVDMFAHEIYFEVVKEIDDEENGD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaaagaagtaattataaattttatggaagagcaggcttataagcctatgaat
ataagagaattagagggtatattttctgtaacaaaggctgaagcaaaagattttaaaaag
gtattggatgatttggaaaaggaaggattggtagttaaaacacgcagaaaaagatatgga
ataccggatagaatgggacttgtaacaggcaagtttcaaggacatcaaaaaggatatggt
tttgttataccagagaatgaaggagcagatgtatttgtaccatcttcctatttaaatggc
gccatgaatggtgataaagtagtagtaaaaataacgaaaatggaagataagggtaaaaaa
tgtgaaggggaaattataagagtattagaaagagccaataaagtagttataggcacgttt
gaagacagtacaaattttggatttgtggtaccagaagaaaagcgaatatatcaagatata
tttatacctaaggaatgtagaaaaaatgctcaaacaggtgatgtggtagttgcagaaata
actgagtggcctgaaaaaagaagaaatccagaggggaagataataaacatattaggcaaa
aaaggagaaaagggcatagacatattgaccataataaaaaagaataatttaccggaagag
tttcctataaaagttcagcaatatgttgaaaatatacctgaagaaattccaaaagaagag
tatgatagaagaactgatttaagggatttacttacagttacaatagatggagaagatgct
aaggatctagatgatgctatatccttaagtaaattgccaaatggaaattactctctaggt
gtccatatagccgacgtatccaactatgtaagggagaaaaatccattagataaagaggca
ttaaagagaggaacttctgtttatcttatagatagagttatacctatgcttcctaagaaa
ctttcaaatggtatttgtagtttaaatcctaatacggatagactaacattgagttgtctc
atggaaatagataaaactggcaaagtagtacagcataatgttgtggaaagtgtaattaga
agcaatgagaggatgacttatactgacgtaacaaagatactaagagataaagatgctgag
actatggaaaagtatagttatttagtggatacatttaatttgatggaagagttgtgtaaa
attttaaataaaaggagaatgacaagaggagctatagattttgactttcaagaatgcaag
ataattttagatgacttaggtgtgcctgtaaagattgagccttatgaaagaggaatatct
aacaggataatagaagagtttatgttagtgtgtaatgaaactatagctgagcatatgttt
tggaccaatttaccttttgtatataggatacatgaagaccctgatgaggaaaaattaatg
cattttaatgagtttgtacataatttaggatatgtgataaaatggggacaggaagtccat
cctaaagcattacaggatattgtagaaaaggtaaaaggtaaaaaagaagagattgtagtg
agtactttgctgctccgttctatgaaacaggccagatattcatcggagtgtgtgggccat
tttgggttggcagctagatactactgccattttacatcgcctataagaagataccctgac
ttaattattcatagaattattaaagaatttataaacggcaggttaactgataatagaata
aaaacattggtaaaagaagtagactatgctgcaaaacaatcttctgaaatggaaagagtt
gctcaagacgctgaaagagaagtagatgatcttaaaaaggcggaatatatgagtaaaaga
ataggggaagaatttgaaggaataatatcttcagttactaatttcggaatgtttgtagaa
cttccaaatacgatagaaggattagttcacatgagtactttggaagatgactactatgta
tatgatgaaaaacatttaagccttgtaggggagagaaatagaaacatttataaattaggt
gatgagataaaaattcgagtattaaaagttgatatgttcgctcatgagatatattttgaa
gtggtaaaggaaatagatgatgaagaaaatggggactag
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