Chlamydia pneumoniae LPCoLN: CPK_ORF00302
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Entry
CPK_ORF00302 CDS
T01859
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clp
Chlamydia pneumoniae LPCoLN
Pathway
clp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPK_ORF00302 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clp03400
]
CPK_ORF00302 (mfd)
Enzymes [BR:
clp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPK_ORF00302 (mfd)
DNA repair and recombination proteins [BR:
clp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPK_ORF00302 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
RecG_dom3_C
AAA_30
ADDB_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACZ32779
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All DBs
Position
1062359..1065610
Genome browser
AA seq
1083 aa
AA seq
DB search
MDFNPVNLDFSISKEFKEETLPLLLENIHPGATAFLAAKMFHDCRASVIMITTPARLDDL
FENLRTFLDQAPVEFPSSEIDLSPKLVNIDAVGKRDHLLYSLNQHRAPIFCVTTLKALLE
KTRSPQATSQQHLDLAVGDVLDPEATTELCKSLGYSQVMLTSEKGEFSCRGGIVDIFPLS
SPEPFRIEFWGEKIISIRSYNPSDQLSTGKVSKISISPAYTEEASGGNYSHSLLDYFSTP
PLYLFDNLEILEDDFADISGTLSSLPDRFFSIGTLYDRISTSNQVYFSETPFPNVKNLKE
NRVIIEAFHRNIEASRQAIPILYPEQIIQNDENPLLAFLQHLQEYMPPHGKPLKLAIYST
KTKSLKEARALAETVARGDVEIYEKTGNLTSSFALVNEAFAAISLSEFASTKVLRRQKQR
THFSVTTEEVFVPIPGETVVHIHNGIGKFLGIEKKPNHLNIETDYLVLEYADKARLYVPS
NQAYLISRYVGTSDKAADLHHLNSSKWKRSRDLTEKSLIVYAEKLLQLEAQRSTTPAFVY
PPHGESVIKFAETFPYEETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRAAV
KAVCDGHRQVIVMVPTTILATQHYETFKERMAGLPIEIAVLSRFSQAKVQKLIYEQVASG
QIDIIIGTHKLINKSLEFKNPGLLIIDEEQRFGVKVKDNLKERYPMIDCLTVSATPIPRT
LHMSLSGARDLSVIAMPPLDRLPVSTFVMEHNTETLTAALRHELLRGGQAYVIHNRIESI
YTLAETIRNLIPEARIGVAHGQMGAEDLSNIFTKFKNQKTNILVATALIENGIDIPNANT
ILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGGGM
KIALHDLEIRGAGNILGTDQSGHIGTIGFNLYCKLLKKAVSALKKHTSPLLFNDDVKIEF
PYNSRIPDTYIETASMRIEFYQKIGNAESSEELTAIQEEMRDRFGPLPQEICWLFALAEV
RLFALQHGISSIKGTANALYVQKCLSKSEQTKKTLPYALSPTPELLVKEVIESIERGFLI
NAS
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaacccagttaatttagatttttctatttccaaagaattcaaagaggaaaca
cttcctttactattagaaaatattcatccaggagccacggcattccttgcagcaaagatg
tttcatgactgtcgtgcttctgtaattatgattacgacacccgcacgtcttgatgatctc
tttgaaaatttaaggacctttttagaccaagctcctgtagaatttccctcttctgaaatt
gatctctctccaaaattagtgaacatagatgctgtggggaagcgagatcatcttctttac
agcttgaatcagcacagggctcctatattctgtgtcactacattaaaagctcttttagaa
aaaacccgttctccacaagctacaagtcaacaacatcttgatctcgcagttggagatgtc
ttagatccagaagcaactacggaactctgtaaaagtttaggatattctcaggtcatgcta
actagcgaaaagggagaattttcttgtcgcggaggaattgttgatattttcccgttatcc
tcgccagagccttttaggatagaattttggggagagaagatcatttctatcagatcttac
aatccttcagatcagctatcgacaggaaaagtctctaaaatttctatctctccagcgtac
acagaagaggcctctggaggaaactattctcattcactattagactatttcagcacccct
cctctctatctctttgataacttagaaattctagaagatgactttgcggatatttctgga
acactttcgtcccttccagatagatttttctctattggcactctctacgatcgcatttca
acgtctaatcaagtttatttctcggagactccgtttcctaacgtcaagaatctcaaggaa
aaccgcgtcatcatcgaagcatttcaccgaaacatagaagcgagtcgccaagcgattcct
atactgtatcctgagcaaattattcagaacgatgagaatcccctacttgctttcctacag
catcttcaagaatatatgcctcctcatggaaagcccttaaaattagccatctacagcaca
aaaacgaaatctttaaaagaggcccgtgctctagcagagactgtagctcgtggggatgtg
gaaatctatgaaaaaacagggaatctaacttccagctttgcattagtaaacgaagccttt
gcagcgatttccctatccgagtttgcttctacaaaagtattgcgtaggcaaaaacaacgc
actcacttttcagtgactactgaagaagtttttgttccgattccaggagagactgttgtc
catattcataatggaattggaaaattcctaggaatagaaaaaaaaccgaaccatctgaat
attgaaacggattatcttgttttagaatatgcagataaagctcggctttatgttccttcg
aaccaagcctatctgatctctcggtatgttgggacttctgataaagctgccgatctccat
catttaaatagttcgaaatggaagcgctctagagatcttactgaaaaatctttgattgtc
tacgcagagaagctcttacagttagaagcgcaacgttcgacaactcctgcttttgtgtac
cctcctcacggagagtccgtaatcaagtttgcggaaacgtttccctatgaagaaaccccc
gatcagttaaagactattgatcagatttacaatgacatgatgtctccaaaactcatggat
agattaatttgcggggatgctggctttgggaaaactgaagtcatcatgcgggctgctgtc
aaggctgtttgcgatggccatcgacaagtcattgttatggttcccacaacgattttagca
actcagcactatgaaacttttaaagaaagaatggcgggattgccgatcgaaattgctgtg
ctttcacgtttctcccaagccaaagtgcaaaaactcatctatgagcaagtagcttcagga
caaattgacattatcattggaactcacaaactcattaacaaaagcctagagtttaagaac
cctggtttattaattattgatgaagaacaacgctttggagttaaagttaaggacaatctg
aaggagcgctatcccatgattgactgtcttacagtatctgcgactcccatcccaaggaca
ttgcacatgtctctatcaggagctcgtgatctatctgtgattgccatgcctcccttggat
aggttgcctgtaagtacttttgtcatggagcataatacagaaacattgacagcggcttta
aggcacgagctccttcgaggaggacaagcctatgtcattcataatcggattgagagcatc
tatactcttgctgagaccattcgcaatctgattcctgaggctcgtattggcgtagctcat
ggtcaaatgggagctgaggacctctctaatatctttacgaaattcaaaaatcagaaaacc
aacatcctcgttgctactgcattgatagaaaacgggattgatattccaaacgccaatacc
attttgatagatcatgccgataagtttggaatggcggatttatatcaaatgaagggacgt
gtcgggcgatggaataaaaaggcctattgttattttctagttcctcacttagacaggttg
tctgggccagcagcgaagcgactcgctgctttaaataagcaggaatatggagggggaatg
aagattgccctccatgatttagaaatccgcggtgcagggaatattctaggaaccgatcag
tcaggacatatcggaactatagggtttaatttgtactgcaaattactaaaaaaagctgtt
tcagctttaaaaaaacacacgtcccccctacttttcaacgacgatgtgaaaatagaattt
ccttacaattcgcgtattcctgatacttacatcgaaactgcatcgatgcgcattgagttt
taccaaaagattggtaatgctgaaagctctgaagagcttaccgcaatacaagaagaaatg
cgagatcgctttggcccattacctcaagagatctgctggctttttgcccttgccgaagta
cgcctatttgctttgcagcatggcatttctagcattaagggaactgcgaatgctttatat
gtgcaaaaatgccttagcaaatctgaacagacaaagaaaaccttgccctatgctctatct
ccaactcctgaacttctagtcaaagaagtcattgagtctatagaaaggggcttcttaatc
aacgcttcataa
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