Campylobacter lari CCUG 22395: UPTC4110_0447
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Entry
UPTC4110_0447 CDS
T03551
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
clq
Campylobacter lari CCUG 22395
Pathway
clq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UPTC4110_0447 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clq03021
]
UPTC4110_0447 (rpoC)
03400 DNA repair and recombination proteins [BR:
clq03400
]
UPTC4110_0447 (rpoC)
Enzymes [BR:
clq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UPTC4110_0447 (rpoC)
Transcription machinery [BR:
clq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UPTC4110_0447 (rpoC)
DNA repair and recombination proteins [BR:
clq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UPTC4110_0447 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AJD03024
LinkDB
All DBs
Position
416977..421530
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKFKPIEIKEDGRPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRFKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAYYDNENTKKVEFCDVLNEEQYLNLMQR
YESSGFKARMGGEVVRDLLANLDLVELLNKLKEDIAATNSEAKKKTIIKRLKVVENFLNS
NLNSNTNIDEVVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGRSVTVPSQDMVLGIYYLSLEKD
GAKGEHKICTGIEEVMIALEAKSLDIHASIRSVVDGRKITTTAGRLIIKSILPDFVPENM
WNKVMKKKDIAALVDYVYKEGGLEVSASFLDKLKDLGFEYATKAGISISIADIIVPDQKQ
KSIEEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKDMMELIKKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKVTMEDCGAHEGVEINEITADGVVIETLEERILGR
VLAENIIDSITNEILFSEGTLVDEEKARIIVESGVKSVSIRTPITCKAKKGVCSKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVVAHKEGFVRFYN
LNTYEDRQGKTIVANHRNAAILLVEPKIKAPFKGTIHIEHAYEDVVVSVKAKNNEAKFIL
RKYDLAKANELAGVSGNIEGKLYIPYSDGAEVAENESIVEVIKEGWNIPNRIPYASELLV
KDGDPITQDIIAGAKGTLKFYMLKGDGLDRIRNLKKGDVVKEKGVFVVIADENDREAKRH
YIPRESVIEFDDSAFVDNPKTIIAKSSKEDKTIIAEWDAYNNTVIAEVAGTINFEDIESG
YSADEQIDEATGKRSLVINEYLPSGVRPALLIIGENDKVVRYQLEPKTVIYVNDGDKVKQ
ADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNTAVVAEIDGVVRFDKPLRSKERIII
QAEDGSSAEYLIDKSKRIQVRDGEFIHAGEKLTDGVISSHDVLRILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEIIVSQMLRQVKIVDSGHTNFIVGDLVSRRKFREENERILKYGGE
PAVAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGDQNLKLKQQN
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaacctatcgaaataaaagaagatggcagacctagagactttgaagct
tttcaattaagacttgcaagtcctgaaaaaatcaaatcatggtcttatggggaagtaaaa
aaaccagaaacgattaattatagaaccttaaagcctgaaagagacgggcttttttgtgct
aaaatttttggaccagtaagagattatgaatgtctttgtggtaaatataaaaaaatgcgc
ttcaaaggcattaagtgtgaaaaatgtggtgttgaagttactagttctaaagtacgtcgt
tcaagaatggggcatattgaattagttactccagtggctcatatttggtatgtaaattct
ttaccaagtcgtatcggtactttgcttggtgtaaagatgaaagatttagaacgcgtattg
tattatgaagcatatatagtagaaaatccaggtgatgcttactatgataatgaaaatact
aaaaaagttgaattttgtgatgtattaaatgaagagcaatatttaaatttaatgcaacgc
tatgaaagtagtggatttaaagctagaatgggtggtgaagttgttagagatttgctagca
aatttagatcttgtagagcttttaaataaactaaaagaagatattgcagcaactaattca
gaggcaaagaaaaaaactatcatcaaacgtttaaaagtggtagaaaatttcttaaatagc
aatttaaatagcaatacaaatattgatgaagtggtacctaatcgtcctgagtggatgatg
attacaaatttacctgtattaccacctgatttaagacctttagtagctttagatggtgga
aaatttgcagtttctgatgtgaatgatttatacagaagagttatcaatagaaatacacgt
ttaaaaagacttatggagcttgatgcgcctgaaattatcattagaaatgaaaaaagaatg
ctacaagaagcagttgatgctttatttgataatggtagaagagcaaatgcggttaaaggt
gcaaacaagcgtccattaaaatctttaagtgaaatcatcaaaggaaaacaaggtcgtttc
agacaaaatctacttggtaaaagggtggacttttcaggtcgtagtgttattgttgttggg
ccaaaacttagaatggatcaatgtggtttacctaaaaaaatggctttagaattatttaag
ccacacttattagctaaacttgaagaaaaaggttatgctaccactgtaaaacaagctaaa
aaaatgatagaaaataaaaccaacgaagtttgggagtgtttagaagaggttgttaaaggt
catcctgtaatgcttaaccgtgctccaaccttgcataaactttctattcaagctttccat
cctgtgcttgtagagggcaaggcaattcaacttcatccattagtatgtgcagcgtttaat
gctgactttgatggggaccaaatggctgtgcatgtacctttatcacaagaagcaatagct
gagtgtaaagtattaatgctctcatctatgaatatcttgcttccagcaagtggtcgttct
gtgactgtgccttctcaagatatggttttggggatttattatctatctttagaaaaagat
ggtgctaagggtgagcataaaatttgtacaggtattgaagaggttatgattgccctagag
gcaaaatctttagatattcatgcaagtattagaagtgtagttgatggtagaaaaatcaca
acaactgcgggaagattaatcattaagtctatcttacctgattttgttcctgaaaatatg
tggaataaagtcatgaagaaaaaagatattgcagctttggttgattatgtttataaagaa
ggtggccttgaagtaagtgctagctttttagataaattaaaagatcttggttttgaatat
gcaacaaaagcgggtatttctatttcaattgctgatattattgtgcctgatcaaaagcaa
aaaagtatagaagaagctaaaaaacaagtaagagaaatccaaaattcatataatttaggt
ttgattacttcaggtgaaagatataataagattattgatatttggaaaagtactaataat
gtcttatcaaaagatatgatggagttaattaaaaaagacaaagaaggatttaactctatt
tatatgatggcagattctggtgctaggggttcagcagctcaaatttcacagcttgctgcg
atgaggggtcttatggctaaacctgatggttctattattgaaacaccgattatttcaaac
ttccgtgaaggacttaacgttcttgaatatttcatttcaactcacggtgctagaaaaggt
cttgcagatacagccttaaaaacagcaaatgcaggttatttgacaagaaaacttatcgat
gtggcacaaaatgtaaaagttacaatggaagattgtggtgcgcatgagggtgttgagatt
aatgaaattaccgcagatggtgttgtgattgaaaccttagaagaaagaattttaggaaga
gttttagctgaaaatatcattgattctattaccaatgagattttattctcagaaggtact
ttagtagatgaggaaaaagctagaattattgttgaaagcggagtaaagagtgtaagcatt
agaactcctattacttgtaaagctaaaaaaggtgtatgttctaaatgctatggtattaac
ctaggtgaaggcaaattagttaaaccaggtgaagctgtaggtattatatctgctcaatca
atcggtgagccaggaacacagcttacgctaagaactttccacagtggtggtactgctagt
acagatttacaagatcgccaagtagtagcacacaaagaaggttttgtaagattttataat
ctaaatacctatgaagatagacaaggtaaaactatagtggctaatcaccgcaatgctgct
attttacttgttgagccaaaaataaaagctccatttaaaggaactatccatattgaacat
gcgtatgaagacgtggtggttagcgttaaagcaaaaaacaatgaagctaaatttatatta
agaaaatatgatttagcaaaagctaatgaacttgcgggtgtaagtggtaatatagaaggt
aaattatatattccatatagtgatggtgctgaagtagctgaaaatgaaagtattgtagaa
gtaatcaaagagggttggaatataccaaaccgtatcccttatgcgagtgaattgctagta
aaagatggagatcctatcactcaagatattatagctggcgcaaaaggtactttgaagttt
tatatgcttaaaggggatggtttagatagaattagaaatctaaaaaagggcgatgtggtt
aaagaaaaaggtgtttttgttgttattgctgatgaaaatgatagagaagcaaaaagacat
tatataccaagagaatctgtgattgaatttgacgatagtgcttttgtagataatcctaaa
accatcatagcaaaatcaagcaaagaagataaaactatcattgctgaatgggatgcatat
aacaatactgtaattgcagaagttgcaggtacaattaactttgaagatattgaatcaggt
tatagtgctgatgaacaaattgatgaagcaacgggtaaaagatcgcttgttattaatgag
tatttgccaagtggagtgcgtccagcattattaatcataggtgaaaatgataaggtagtg
cgttatcaactagagccaaaaactgttatttatgtaaatgatggcgataaggttaaacaa
gctgatatcttagctaaaactccaaaggcagcggctaagtcaaaagatattactggaggt
cttccaagggtatctgaattatttgaagcaagaaagccaaaaaataccgctgttgtggct
gaaattgacggggttgttagatttgataaacctttaagatcaaaagaaagaatcattatt
caagcagaagatggaagtagtgcagagtatttgatagataaatcaaaacgcattcaagta
agagatggtgaatttatccatgcgggtgagaaattaaccgatggagttatttcaagtcat
gatgtgcttagaattttaggtgaaaaagcattgcattattatcttatttctgaaattcag
caagtttatcgtggtcaaggtgttgtgatttctgataagcatattgaaatcatcgtatcg
caaatgctaagacaagtaaaaattgttgatagtggtcatacaaactttattgtgggtgat
ttggtttcaagaagaaaattcagagaagaaaatgaaagaattttaaaatacggcggcgaa
cccgctgtagctgagcccgtattgcttggggttacaagagcagctattggaagtgatagt
gtgatttcagctgcttcattccaagaaacaacaaaagttttaacagaagcaagtattgca
ggtaaatttgactatcttgaagatctaaaagaaaatgtaatcttaggtcgtatgattcct
gttggtacaggtctttacggggatcaaaatttaaaacttaaacaacaaaattaa
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