KEGG   Campylobacter lari CCUG 22395: UPTC4110_0999
Entry
UPTC4110_0999     CDS       T03551                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
  KO
K03086  RNA polymerase primary sigma factor
Organism
clq  Campylobacter lari CCUG 22395
Pathway
clq02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:clq00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    UPTC4110_0999 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clq03021]
    UPTC4110_0999 (rpoD)
Transcription machinery [BR:clq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     UPTC4110_0999 (rpoD)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r3 Sigma70_r4 Sigma70_r1_2 Sigma70_r4_2
Other DBs
NCBI-ProteinID: AJD03543
LinkDB
Position
960982..962859
AA seq 625 aa
MANETNVLEELFKENSKDYITYEKLVKYFAKLPNATSAKKIRDLMDKYKVELISSAEIAK
KRNLEEAKKLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLNKD
EEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFEDDDKSDDD
KSDDEIDSEEENENEENENSSEKKPKKVSKKEDERTLKVIESFKALEKAKKEWLKTISTI
NAEKNDDELLDKLIIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRL
EYRLPMFSEELKQRHQDILKDITKLSKEEIAERALETTMVSTYMEIKKLIQTKEASQNSF
DLEKDQLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIG
LMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREYL
QKEGKEPDVSIIAKEVGLSVDKVKQVIKITKEPISLEAPISNEDDGKFGDFVEDRTSISP
MDHILKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQI
ESSAIKKLKHPKVGRKLKNYIEGWK
NT seq 1878 nt   +upstreamnt  +downstreamnt
atggctaatgaaaccaatgttttagaagaacttttcaaagaaaattctaaagattatatc
acatatgaaaaacttgtcaagtattttgcaaagcttccaaatgcaacaagtgcaaaaaaa
atccgtgatttaatggataaatacaaagtagaattaatctcctcagccgaaattgctaaa
aaaagaaatttagaagaagcaaaaaaactacaagaagaaaaacaaaaattacaagataca
agtttggaaaatgaatttgatttagccaatgaaaatgatttattagaatggagtagatca
gactcgcccgtgagaatgtatttaagagaaatgggacaaattgctcttttaaacaaagat
gaggaagttgaaatttctaaaaaaattgagctaggtgaagacattatcattgatgctttt
tgttctgtgccttatttgattgattttatacttgattacaaagaacctttgattaataga
gaaagaagagtaaaagagctttttaaaagctttgaagatgatgataaaagtgatgatgat
aaaagtgatgatgaaatagattctgaagaagaaaatgaaaatgaggaaaatgaaaactca
agcgaaaaaaaacctaaaaaagtaagtaaaaaagaagacgaaagaaccttaaaagttata
gaaagttttaaagctttagaaaaagcaaaaaaagaatggttaaaaaccatatctactatt
aatgcagaaaaaaatgatgatgaattgttagataaactcataattgcttttaagaaaaat
atattaaaagaaaaactaatggatctaggtccaacttcaaaacttatctctgaaatcgta
aaatccatggaaacagctttaaaaagcgatgaggaatttgacaaagaattaaaacgctta
gaatatcgcctgccaatgttttcagaagaattaaaacaaagacatcaagatatcttaaaa
gatattaccaaacttagcaaagaagaaatcgctgaacgcgcactagaaactaccatggta
agcacttatatggagattaaaaaactcattcaaactaaagaagctagccaaaattctttt
gatttagaaaaagatcaactaaaagaaattctagagcaaataaaacgcggtaaaaaaatc
tcagatgaagctaaaactagaatggcaaaatcaaatttacgcttggttgtaagcattgct
aaaagatatactaaccgtggattaccatttttagatttgatccaagagggcaatatagga
ttaatgaaagcggtagataaatttgaatacaaacgcggttataaattttcaacctatgca
acttggtggattagacaagccatttcaagagcaattgctgatcaagcaagaacgattaga
attcctattcatatgatagaaactattaatcaaatcaataaaatcattcgtgaatactta
caaaaagaaggcaaagagcctgatgtaagcattattgccaaagaagtaggacttagtgta
gataaagtaaaacaagtgattaaaatcactaaagaaccaatttccctagaagcacctatt
agcaatgaagatgatggtaaatttggagactttgtagaagatagaacttcaatttctcct
atggatcatatcttaaaagatgatttaaaagaacaaattgatgaagttttagatcagctt
aatgatagagagaaagctgttattagaatgcgttttggtttaatggatgatgaaagcgat
agaaccttagaagaaatcggcaaagaattaaatgttacaagagaaagagtaagacaaata
gaaagctcagctataaaaaaactcaaacatccaaaagttggtagaaaacttaaaaattac
atagaaggttggaaataa

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