Campylobacter lari CCUG 22395: UPTC4110_0999
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Entry
UPTC4110_0999 CDS
T03551
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
clq
Campylobacter lari CCUG 22395
Pathway
clq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
clq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
UPTC4110_0999 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clq03021
]
UPTC4110_0999 (rpoD)
Transcription machinery [BR:
clq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UPTC4110_0999 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AJD03543
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Position
960982..962859
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AA seq
625 aa
AA seq
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MANETNVLEELFKENSKDYITYEKLVKYFAKLPNATSAKKIRDLMDKYKVELISSAEIAK
KRNLEEAKKLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLNKD
EEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFEDDDKSDDD
KSDDEIDSEEENENEENENSSEKKPKKVSKKEDERTLKVIESFKALEKAKKEWLKTISTI
NAEKNDDELLDKLIIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRL
EYRLPMFSEELKQRHQDILKDITKLSKEEIAERALETTMVSTYMEIKKLIQTKEASQNSF
DLEKDQLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIG
LMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREYL
QKEGKEPDVSIIAKEVGLSVDKVKQVIKITKEPISLEAPISNEDDGKFGDFVEDRTSISP
MDHILKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQI
ESSAIKKLKHPKVGRKLKNYIEGWK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgaaaccaatgttttagaagaacttttcaaagaaaattctaaagattatatc
acatatgaaaaacttgtcaagtattttgcaaagcttccaaatgcaacaagtgcaaaaaaa
atccgtgatttaatggataaatacaaagtagaattaatctcctcagccgaaattgctaaa
aaaagaaatttagaagaagcaaaaaaactacaagaagaaaaacaaaaattacaagataca
agtttggaaaatgaatttgatttagccaatgaaaatgatttattagaatggagtagatca
gactcgcccgtgagaatgtatttaagagaaatgggacaaattgctcttttaaacaaagat
gaggaagttgaaatttctaaaaaaattgagctaggtgaagacattatcattgatgctttt
tgttctgtgccttatttgattgattttatacttgattacaaagaacctttgattaataga
gaaagaagagtaaaagagctttttaaaagctttgaagatgatgataaaagtgatgatgat
aaaagtgatgatgaaatagattctgaagaagaaaatgaaaatgaggaaaatgaaaactca
agcgaaaaaaaacctaaaaaagtaagtaaaaaagaagacgaaagaaccttaaaagttata
gaaagttttaaagctttagaaaaagcaaaaaaagaatggttaaaaaccatatctactatt
aatgcagaaaaaaatgatgatgaattgttagataaactcataattgcttttaagaaaaat
atattaaaagaaaaactaatggatctaggtccaacttcaaaacttatctctgaaatcgta
aaatccatggaaacagctttaaaaagcgatgaggaatttgacaaagaattaaaacgctta
gaatatcgcctgccaatgttttcagaagaattaaaacaaagacatcaagatatcttaaaa
gatattaccaaacttagcaaagaagaaatcgctgaacgcgcactagaaactaccatggta
agcacttatatggagattaaaaaactcattcaaactaaagaagctagccaaaattctttt
gatttagaaaaagatcaactaaaagaaattctagagcaaataaaacgcggtaaaaaaatc
tcagatgaagctaaaactagaatggcaaaatcaaatttacgcttggttgtaagcattgct
aaaagatatactaaccgtggattaccatttttagatttgatccaagagggcaatatagga
ttaatgaaagcggtagataaatttgaatacaaacgcggttataaattttcaacctatgca
acttggtggattagacaagccatttcaagagcaattgctgatcaagcaagaacgattaga
attcctattcatatgatagaaactattaatcaaatcaataaaatcattcgtgaatactta
caaaaagaaggcaaagagcctgatgtaagcattattgccaaagaagtaggacttagtgta
gataaagtaaaacaagtgattaaaatcactaaagaaccaatttccctagaagcacctatt
agcaatgaagatgatggtaaatttggagactttgtagaagatagaacttcaatttctcct
atggatcatatcttaaaagatgatttaaaagaacaaattgatgaagttttagatcagctt
aatgatagagagaaagctgttattagaatgcgttttggtttaatggatgatgaaagcgat
agaaccttagaagaaatcggcaaagaattaaatgttacaagagaaagagtaagacaaata
gaaagctcagctataaaaaaactcaaacatccaaaagttggtagaaaacttaaaaattac
atagaaggttggaaataa
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