Campylobacter lari RM16701: UPTC16701_0021
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Entry
UPTC16701_0021 CDS
T03550
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
clr
Campylobacter lari RM16701
Pathway
clr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UPTC16701_0021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clr03019
]
UPTC16701_0021
Messenger RNA biogenesis [BR:
clr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UPTC16701_0021
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AJD04096
LinkDB
All DBs
Position
complement(18455..20413)
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AA seq
652 aa
AA seq
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MSEENKTQEQNKTKRFNKFRNKRKKDSQNQEQNSEIKNETKVENTQTEASEEKKKKKKNR
NLPSKLSGNEEWQIELAKSIEANKIMHELRLHPLKHNNSSEHKIRITPLGGLGEIGGNIT
VFETNNDAIIVDIGMSFPDGTMHGVDIIIPDFDYVRKIKNKIRAIIITHAHEDHIGAVPY
FFKEFQFPIYATPLALGMISNKFEEHGLKAERKWFRPITKRKIYEIGEFNLEWIHITHSI
IDACALAIKTKAGTIIHTGDFKIDQTPIDGYPTDLSRLAQYGEEGVLCLLSDSTNSYKEG
YTKSESSVGPTFDQIFAKTKGRVIMSTFSSNIHRVYQAISYGLKYGRKVCVIGRSMERNL
YTTMELGYIKLDRKIFIDADEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKP
SDQVIISAKAIPGNEANVSAVLDFLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLVKP
KFFLPVHGEYNHINKHKETALKCGIPERNIYLMSDGDQVELCQKYIKRVKTVKTGKVFVD
NQINKQIADDVVIDRQKLADSGIVVIIAQLDKASKTLINKPRVFSYGLVADKQDGAFSKE
MSDVLSQFFPNVKDEILDNPKVLEAQIRQVLRKHIFRKIKKYPTIVPTIFVM
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagaaaacaaaactcaagagcaaaataaaactaaaagatttaataaatttaga
aacaaaagaaaaaaagattcacaaaatcaagagcaaaatagtgaaattaaaaacgaaaca
aaagtagaaaatactcaaactgaagctagcgaagaaaaaaagaaaaagaaaaaaaataga
aatttaccttctaaattaagcggtaatgaagaatggcaaatagaacttgctaaaagcata
gaagctaataaaatcatgcacgagctaagacttcaccctttaaaacacaacaactcaagc
gaacataaaattcgtattacgcctttgggtgggcttggggaaatcggtggaaatatcact
gtttttgaaaccaacaacgatgcaattatcgttgatataggtatgagttttccagatgga
accatgcatggagtagatattatcatacctgattttgactatgtaagaaagattaaaaac
aaaattcgcgctatcatcatcactcatgctcatgaagatcatatcggtgctgtgccatat
tttttcaaagaatttcaatttcctatctacgcaacacctttagcattaggtatgatttca
aataaatttgaagaacatggtttaaaagctgagcgtaaatggtttagacctataacaaaa
agaaaaatttatgaaataggcgagtttaacttagaatggattcatataacccactctatc
atcgatgcttgtgctttagctattaaaactaaagcaggaaccatcatacacactggtgat
tttaaaatagatcaaacaccaattgatggttatccaacggatttaagtcgtttagctcaa
tatggcgaagaaggcgtgctttgtcttttaagtgatagcacaaactcatataaagaaggt
tacacaaaaagtgaaagctccgtaggtcctacttttgatcaaatttttgccaaaactaaa
ggcagagtaatcatgagcacctttagttctaatatccaccgtgtatatcaagctattagt
tatggtttaaaatatggtagaaaagtgtgtgttataggacgctctatggaaagaaatctc
tataccactatggaacttggctatatcaaacttgatagaaaaattttcattgacgctgat
gaagtaagcaaatataaagacaatgaagtgctaattgtcaccacaggaagtcaaggtgag
acgatgagtgctttatatagaatggcaactgatgagcataaatttatcaaaatcaaacct
agcgatcaagttatcatttcagctaaagcaataccaggtaatgaagcaaatgtttctgct
gtgcttgattttcttttaaaagcaggggctaaagtagcttatcaagaatttagcgaaatt
catgtaagcggacatgctagtatagaagagcaaaaactcatgctaactttagtaaaacct
aaatttttcttaccagtgcatggagaatataatcacatcaataaacacaaagaaaccgct
ctaaaatgtggcatacctgaaagaaatatctacttaatgagtgatggtgatcaagtagag
ctttgtcaaaaatacatcaaacgtgtaaaaacagttaaaacaggaaaagtctttgtagat
aatcaaatcaacaaacaaatcgcagatgatgtagtaattgatagacaaaaactagcagat
agtggcatagttgtcatcattgctcagcttgataaagcaagtaaaacactgattaataaa
ccaagagtatttagttatggcttggtagctgataaacaagatggagcattctcaaaagaa
atgagtgatgttttaagtcaatttttcccaaatgtaaaagatgaaattttagataatcca
aaagttttagaagctcaaattagacaagtactaagaaagcatatttttagaaaaatcaaa
aaatatccaaccatagtaccaactatttttgtgatgtaa
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