Campylobacter lari RM16701: UPTC16701_0447
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Entry
UPTC16701_0447 CDS
T03550
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
clr
Campylobacter lari RM16701
Pathway
clr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UPTC16701_0447 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clr03021
]
UPTC16701_0447 (rpoC)
03400 DNA repair and recombination proteins [BR:
clr03400
]
UPTC16701_0447 (rpoC)
Enzymes [BR:
clr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UPTC16701_0447 (rpoC)
Transcription machinery [BR:
clr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UPTC16701_0447 (rpoC)
DNA repair and recombination proteins [BR:
clr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UPTC16701_0447 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AJD04509
LinkDB
All DBs
Position
414733..419286
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKFKPIEIKEDGRPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRFKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAYYDNENTKKVEFCDVLNEEQYLNLMQR
YESSGFKARMGGEVVRDLLANLDLVELLNKLKEDIAATNSEAKKKTIIKRLKVVENFLNS
NLNSNTNIDEVVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGRSVTVPSQDMVLGIYYLSLEKD
GAKGEHKICTGIEEVMIALEAKSLDIHASIRSVVDGRKITTTAGRLIIKSILPDFVPENM
WNKVMKKKDIAALVDYVYKEGGLEVSASFLDKLKDLGFEYATKAGISISIADIIVPDQKQ
KSIEEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKDMMELIKKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKVTMEDCGAHEGVEINEITADGVVIETLEERILGR
VLAENIIDSITNEILFSEGTLVDEEKARIIVESGVKSVSIRTPITCKAKKGVCSKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVVAHKEGFVRFYN
LNTYEDRQGKTIVANHRNAAILLVEPKIKAPFKGTIHIEHAYEDVVVSVKAKNNEAKFIL
RKYDLAKANELAGVSGNIEGKLYIPYSDGAEVAENESIVEVIKEGWNIPNRIPYASELLV
KDGDPITQDIIAGAKGTLKFYMLKGDGLDRIRNLKKGDVVKEKGVFVVIADENDREAKRH
YIPRESVIEFDDSAFVDNPKTIIAKSSKEDKTIIAEWDAYNNTVIAEVAGTINFEDIESG
YSADEQIDEATGKRSLVINEYLPSGVRPALLIIGENDKVVRYQLEPKTVIYVNDGDKVKQ
ADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNTAVVAEIDGVVRFDKPLRSKERIII
QAEDGSSAEYLIDKSKRIQVRDGEFIHAGEKLTDGVISSHDVLRILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEIIVSQMLRQVKIVDSGHTNFIVGDLVSRRKFREENERILRYGGE
PAVAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGDQNLKLKQQN
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaacctatcgaaataaaagaagatggcagacctagagactttgaagct
tttcaattaaggcttgcaagtcctgaaaaaatcaaatcatggtcttatggggaagtaaaa
aaaccagaaacgattaattatagaaccttaaagcctgaaagagacggacttttttgtgct
aaaatttttggaccagtaagagattacgaatgtctttgtggtaagtataaaaaaatgcgt
ttcaaaggcattaagtgtgaaaaatgtggtgttgaagttactagttctaaagtgcgtcgt
tcaagaatgggacatatcgagctagttacaccggtggctcatatttggtatgtaaattct
ttaccaagtcgtatcggtactttgcttggtgtaaagatgaaagacttagaacgcgtattg
tattatgaagcatatatagtagaaaatccaggtgatgcttactatgataatgaaaatact
aaaaaagttgaattttgtgatgtattaaatgaagagcagtatttaaatttaatgcagcgc
tatgaaagtagtggatttaaagctagaatgggcggtgaagttgttagagatttgctagca
aatttagatcttgtagagcttttaaataaactaaaagaagatattgcagcaacgaattca
gaagcaaagaaaaaaactatcattaaacgtttaaaagtggtagaaaatttcttaaatagc
aatttaaatagcaatacaaatattgatgaagtggtacctaatcgtcctgagtggatgatg
attacaaatttacctgtattaccacctgatttaagacctttagtagctttagatggtgga
aaatttgcagtttctgatgtgaatgatttatacagaagagttatcaatagaaatacacgt
ttaaaaagacttatggagcttgatgcacctgaaatcatcattagaaatgaaaaaagaatg
ctacaagaagcagttgatgctttatttgataatggtagaagagcaaatgcggttaaaggt
gcaaataaacgtccattaaaatctttaagtgaaataatcaaaggaaaacaaggtcgtttc
agacaaaatctacttggtaaaagggtggacttttcaggtcgtagtgtcattgttgttggg
ccaaaacttagaatggatcaatgtggtttacctaaaaaaatggctttagaattatttaag
ccacacttattagctaaacttgaagaaaaaggttatgctaccactgtaaaacaagctaaa
aaaatgatagaaaataaaaccaacgaagtttgggagtgtttagaagaggttgttaaaggt
catcctgtaatgcttaaccgtgctccaaccttgcataaactttctattcaagcatttcac
cctgtacttgtagagggtaaagcaattcaacttcatccattagtatgtgcagcgtttaat
gctgactttgatggggaccaaatggctgtgcatgtgcctttatcacaagaagcaatagct
gagtgtaaagtattaatgctctcatctatgaatatcttgcttccagcaagtggtcgttct
gtgactgtgccttctcaagatatggttttggggatttattatctatctttagaaaaagat
ggtgctaagggtgaacataaaatttgcacaggtattgaagaggttatgattgccctagaa
gcaaaatctttagatattcatgcaagtattagaagtgtagttgatggtagaaaaatcaca
acaactgcgggaagattaatcattaagtctatcttacctgattttgttcctgaaaatatg
tggaataaagtcatgaagaaaaaagatattgcagctttggttgattatgtatataaagaa
ggtggccttgaagtaagtgctagctttttagataaattaaaagatcttggttttgaatat
gcaacaaaagcgggtatttctatttcaattgctgatattattgtgcctgatcaaaagcaa
aaaagtatagaagaagctaaaaaacaagtaagagaaatccaaaattcatataatttaggt
ttgattacttcaggtgaaagatataataagattattgatatttggaaaagtactaataat
gtcttatcaaaagatatgatggagttgattaaaaaagacaaagaaggatttaactctatt
tatatgatggcagattctggtgctaggggttcagcagctcaaatttcacagcttgctgcg
atgaggggtcttatggctaaacctgatggttctattattgaaacaccgattatttcaaac
ttccgtgaaggacttaacgttcttgaatatttcatttcaactcacggtgctagaaaaggt
cttgcagatacagccttaaaaacagcaaatgcaggttatttgacaagaaaacttatcgat
gtggcacaaaatgtaaaagttacaatggaagattgtggtgcacatgagggtgttgagatt
aatgaaattaccgcagatggtgttgtgattgaaaccttagaagaaagaattttaggaaga
gttttagctgaaaatattattgattctattactaatgagattttattctcagaaggtact
ttagtagatgaagaaaaagctagaattattgttgaaagtggagtaaagagtgtaagcatt
agaactcctattacttgtaaagctaaaaaaggcgtatgttctaaatgctatggtattaac
ctaggtgaaggcaaattagttaagccaggtgaggctgtaggtattatatctgctcaatca
atcggtgagccaggaacacagcttacgctaagaactttccacagtggtggtactgctagt
acagatttacaagatcgccaagtagtagcacacaaagaaggttttgtaagattttataat
cttaatacctatgaagatagacaaggtaaaactatagtggctaatcaccgcaatgctgct
attttacttgttgaaccaaaaatcaaagctccatttaaaggaactatccatattgaacat
gcgtatgaagatgtggtggttagcgttaaagcaaaaaacaatgaagctaaatttatatta
agaaaatatgacttagcaaaagctaatgaacttgcgggtgtaagcggtaatattgaaggt
aaattatatattccatatagcgatggtgctgaagtagctgaaaatgaaagtattgtagaa
gtaatcaaagagggttggaatataccaaaccgtatcccttatgcgagtgaattgctagta
aaagatggagatcctatcactcaagatattatagctggcgcaaaaggtactttgaagttt
tatatgcttaaaggggatggtttagatagaattagaaatctaaaaaagggcgatgtggtt
aaagaaaaaggtgtttttgttgttattgctgatgaaaatgatagagaagcaaaaagacat
tatataccaagagaatctgtgattgaatttgacgatagtgcttttgtagataatcctaaa
accatcatagcaaaatcaagcaaagaagataaaactatcattgctgaatgggatgcgtat
aataatactgtaattgcagaagttgcaggtacaattaactttgaagatattgaatcaggt
tatagtgctgatgaacaaattgatgaagcaacgggtaaaagatcgcttgttattaatgag
tatttgccaagtggagtgcgtccagcattattaatcataggtgaaaatgataaggtagtg
cgttatcaactagagccaaaaactgttatttatgtaaatgatggcgataaggttaagcaa
gctgatatcctagctaaaactccaaaggcagcggctaagtcaaaagatattactggaggt
cttccaagggtatctgaattatttgaagcaagaaagccaaaaaataccgctgttgtggct
gaaattgacggggttgttagatttgataaacctttaagatcaaaagaaagaatcattatt
caagcagaagatggaagtagtgcagagtatttgatagataaatcaaaacgcattcaagta
agagatggtgaatttatccatgcgggtgagaaattaaccgatggagttatttcaagtcat
gatgtgcttagaattttaggtgaaaaagcattgcattattatcttatttctgaaattcag
caagtttatcgtggtcaaggtgttgtgatttctgataagcatattgaaatcatcgtatcg
caaatgctaagacaagtaaaaattgttgatagtggtcatacaaactttattgtaggtgat
ttggtttcaagaagaaaattcagagaagaaaatgaaagaattttaagatatggtggtgaa
cctgctgtagctgaacctgtattgcttggggttacaagagcagctattggaagtgatagt
gtgatttcagctgcttcattccaagaaacaacaaaagttttaacagaagcaagtattgca
ggtaaatttgattatcttgaagatctaaaagaaaatgtaatcctaggtcgtatgattcct
gttggtacaggtctttatggagatcaaaatttaaagcttaagcaacaaaattaa
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