Campylobacter lari RM16701: UPTC16701_0990
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Entry
UPTC16701_0990 CDS
T03550
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
clr
Campylobacter lari RM16701
Pathway
clr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
clr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
UPTC16701_0990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clr03021
]
UPTC16701_0990 (rpoD)
Transcription machinery [BR:
clr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UPTC16701_0990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
BRCC36_C
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AJD05025
LinkDB
All DBs
Position
964871..966748
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AA seq
625 aa
AA seq
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MANETNVLEELFKENSKDYITYEKLVKYFAKLPNATSAKKIRDLMDKYKVELISSAEIAK
KRNLEEAKKLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLNKD
EEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFEDDDKSDDD
KSDDEIDSEEENENEENENSSEKKPKKTSKKEDERTLKVIESFKALEKAKKEWLKTISTI
NAEKNDDELLDKLIIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRL
EYRLPMFSEELKQRHQDILKDITKLSKEEIAERALETTMVSTYMEIKKLIQTKEASQNSF
DLEKDQLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIG
LMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREYL
QKEGKEPDVSIIAKEVGLSVDKVKQVIKITKEPISLEAPISNEDDGKFGDFVEDRTSISP
MDHILKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQI
ESSAIKKLKHPKVGRKLKNYIEGWK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgaaaccaatgttttagaagaacttttcaaagaaaattctaaagattatatc
acatatgaaaaacttgtcaagtattttgcaaagcttccaaatgcaacaagtgcaaaaaaa
atccgtgatttaatggataaatacaaagtagaattaatctcttcagccgaaattgctaaa
aaaagaaatttagaagaagcaaaaaaactacaagaagaaaaacaaaaattacaagataca
agtttagaaaatgaatttgatttagccaatgaaaatgatttattagaatggagtagatca
gactcacctgtgagaatgtatttaagagaaatgggacaaattgctcttttaaacaaagat
gaggaagttgaaatttctaaaaaaattgagctaggtgaagacattatcattgatgctttt
tgttctgtgccttatttgattgattttatacttgattacaaagaacctttgattaataga
gaaagaagagtaaaagagctttttaaaagctttgaagatgatgataaaagtgatgatgat
aaaagtgatgatgaaatagattctgaagaagaaaatgaaaacgaggaaaatgaaaactca
agcgaaaaaaaacctaaaaaaacaagtaaaaaagaagacgaaagaaccttaaaagttata
gaaagttttaaagctttagaaaaagcaaaaaaagaatggttaaaaaccatatctactatt
aatgcagaaaaaaatgatgatgaattgttagataaactcataattgcttttaagaaaaat
atactaaaagaaaaactaatggatttgggcccaacttcaaaacttatctctgaaatcgta
aaatccatggaaacagctttaaaaagcgatgaggaatttgacaaagaattaaaacgctta
gaatatcgtttgccaatgttttcagaagaattaaaacaaagacaccaagatatcttaaaa
gatattaccaaacttagcaaagaagaaatcgctgaacgcgcactagaaactaccatggta
agcacttatatggagattaaaaaactcattcaaactaaagaagctagccaaaattctttt
gatttagaaaaagatcaactaaaagaaattctagagcaaataaaacgcggtaaaaaaatc
tcagatgaagctaaaactagaatggcaaaatcaaatttacgcttggttgtaagcattgct
aaaagatatactaaccgtggattaccatttttagatttgatccaagagggcaatataggc
ttaatgaaagcggtagataaatttgaatacaaacgcggttataagttttcaacctatgca
acttggtggattagacaagccatttcaagagcaattgccgatcaagcaagaacgattaga
attcctattcatatgatagaaactattaatcaaatcaataaaatcattcgtgaatactta
caaaaagaaggcaaagagcctgatgtaagcattattgccaaagaagtaggacttagtgta
gataaagtaaaacaagtgattaaaatcactaaagaaccaatttccctagaagcacctatt
agcaatgaagatgatggtaaatttggagattttgtagaagatagaacttcaatttctcct
atggatcatatcttaaaagatgatttaaaagaacaaattgatgaagttttagatcagctt
aatgatagagaaaaagctgttattagaatgcgttttggtttaatggatgatgaaagcgat
agaaccttagaagaaatcggcaaagaattaaatgttacaagagaaagagtaagacaaata
gaaagctcagctataaaaaaactcaaacatccaaaagttggtagaaaacttaaaaattac
atagaaggttggaaataa
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