Campylobacter lari RM16701: UPTC16701_1008
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Entry
UPTC16701_1008 CDS
T03550
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
clr
Campylobacter lari RM16701
Pathway
clr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UPTC16701_1008 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clr03400
]
UPTC16701_1008 (mfd)
Enzymes [BR:
clr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UPTC16701_1008 (mfd)
DNA repair and recombination proteins [BR:
clr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UPTC16701_1008 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
DPCD
Motif
Other DBs
NCBI-ProteinID:
AJD05042
LinkDB
All DBs
Position
complement(983865..986804)
Genome browser
AA seq
979 aa
AA seq
DB search
MQAKLYEYLLSNKTELIVCENDKEADELAQVCLFLNLKTFILPDFRAEFGSDLRSFSKEL
FEICKVLNAYHKEDENKILISPIKTILQKLPGKKHLKNIILKRNSLLALEKFKEEILHSG
YEFVDIVQDKGEVSIRGDIIDIFAINEEQPFRILLFSDEIESIRYFDIHTQKSIPNELSK
IEICPFLSAFNQEQYENLQEKIQNFQSQSIINDVNSLGFWCVDDFCDYLDLNFISIKKFD
INDFEEDISKINQNILPEPRFCKDLVSSYNHDFFTFHKDKKITVLAKNEALFKALNLQEF
PNIKLKISQERINLSTQDELIISLNKKEKSKRVRKASLVIDELRVGDFVVHEDYGIAKFL
GLEIIIIAGAKKEFVALGYLNNDKLLLPVENLYMIDKYIGASGGVPLLDKLGKGSFLKIK
ERLKEKLFAIASNIVSLAAARALIKAKELKISQELQDEFINKAGFFYTKDQSQVCQEITQ
DLKSMQVMDRLLSGDVGFGKTEVAMNAIFTCVKSGYTALFFVPTTLLSAQHFKTLKRRFD
SFNIEVFKLDRFTSAKEKKQVLAFLKENKPCVVVGTHSLLGVECENLGLVVIDEEHKFGV
KQKEKLKELSKNSHILSMSATPIPRSLNQALSSLKSYSVLQTPPEDRLDVRTFVRESNDA
LIKEAISRELRRAGQIFYIHNHIASIDGCKKYLLDLFPNLKILILHSKIDAKTTEEEMIK
FENKEYDLLLCTSIVESGIDLANANTIIVENSDRFGMADLHQLRGRVGRSAKQGYCYFLI
EDKEKITKDSLKRLTSLESNSYLGSGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYL
KMLEDEINKLSKKEEIKEKKIDLKLNINAFLNSEYISEDRLRLELYRRLSKCMSVNEVYE
IESEMNDRFGRPDIFTKQFLDLIIIKILASKHYKLVSNYEQNICFVKDDESKEVIKAKSK
DDDDVIEAILMHLRKSEKA
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctaaattatatgaatatttattaagtaataaaactgagttaatagtttgtgag
aatgataaagaagcagatgaattagctcaagtttgtttatttttaaatttaaaaactttc
attttgcccgattttagagcagaatttggtagcgacttgcgctctttttctaaagagctt
tttgaaatttgtaaagtattgaatgcttatcataaagaagatgaaaataaaattttaatt
tctcctataaaaacaatcttacaaaaactccctggaaaaaagcatttaaaaaacattatt
cttaaaagaaattcacttcttgctttagagaaatttaaagaagaaattttacatagtggg
tatgagtttgtagacatagttcaagataagggcgaagtttcaatacgtggggatattata
gatatttttgcgattaacgaagaacaaccttttagaattttgcttttttcagatgagata
gaaagtataagatattttgatattcatacacaaaaatcaatcccaaatgaactttcaaag
attgaaatttgtccatttttgagtgcttttaatcaagagcaatatgaaaatttacaagaa
aaaattcaaaattttcaaagtcaaagcattatcaatgatgttaattctttaggtttttgg
tgtgttgatgatttttgtgattatttagatctaaatttcataagcataaaaaaatttgat
ataaatgattttgaagaagatattagtaaaatcaatcaaaatattttacctgaaccaaga
ttttgtaaagatttagtaagttcttataatcatgattttttcacttttcataaagataaa
aaaattactgttttagcaaagaatgaagctttgtttaaagctttaaatttacaagaattt
ccaaatattaaattaaaaatatctcaagaaagaattaatttaagcactcaagatgagctt
atcatctctttaaataaaaaagaaaaaagtaaaagagttagaaaagcaagtttggtaata
gatgagcttagagtcggggattttgttgtgcatgaagattatggtatagctaaattttta
ggtcttgagattattataattgcaggagcaaaaaaagaatttgtagctcttgggtattta
aataatgacaagcttttattacctgttgaaaatttgtatatgattgataaatatatcggt
gcaagtggtggtgtgcctttgcttgataagcttggaaaaggaagttttctaaaaatcaaa
gaaagattaaaggaaaaactatttgccattgcttcaaatatagtttctttggcagcggct
agagctttgataaaggcaaaagaattaaaaatttctcaagaattacaagatgaatttatc
aataaagcgggatttttttatactaaagatcaaagtcaagtttgccaagaaatcactcaa
gatttaaaaagtatgcaggtaatggataggcttttaagtggtgatgtgggttttggtaaa
acagaagttgctatgaatgctatatttacttgtgtaaaaagtggctatacggctttgttt
tttgtaccaactactttactttcagctcagcattttaaaaccttaaaacgaagatttgat
tcttttaatatagaggtttttaaactagatcgttttactagtgctaaagaaaaaaaacaa
gttttggcatttttaaaagaaaataaaccttgtgtggtggttggaacgcattctctttta
ggagttgagtgtgaaaatttaggtttagttgtgatagatgaggagcataaatttggtgta
aaacaaaaagaaaaactcaaagaattaagtaaaaactcccatattttatctatgtcagca
acgcctataccaagaagtttaaatcaagctcttagttctttaaaatcatatagtgtttta
caaactccacctgaggatcgtttggatgtgcgtacctttgttagagaaagtaatgatgct
ttgattaaagaagctatttcaagagaattaagaagagcagggcagattttttatatacac
aatcatatagcaagtattgatgggtgtaaaaaatatcttttagatttgtttccgaattta
aaaattttaatcttgcattctaaaattgatgcaaaaactactgaagaagaaatgattaaa
tttgaaaataaagaatatgatttattgctttgtacttctatagtcgaaagtggtattgat
ttggcaaatgcaaatactattatagtagaaaattcagatcgctttggtatggctgatttg
catcaacttagaggaagagtagggcgtagtgctaagcaaggatattgttattttttgatt
gaagataaggaaaaaatcacaaaagattctttaaaaagacttacgagtttagagagtaat
tcttatttaggttcaggaagcgtgcttgcttatcatgatttagaaattcgtggtggtgga
aatttattaggcgtagatcaaagtgggcatatagagcaaattggttatagtttatatctt
aaaatgttagaagatgagattaataagctaagtaaaaaagaagaaattaaagagaaaaaa
atagatttaaagcttaacatcaatgcctttttaaatagtgagtatattagtgaagatcgt
ttgagattagaactttatagaagacttagtaaatgtatgagtgttaatgaagtttatgag
atagaaagtgagatgaatgatcgttttggaaggcctgatatttttactaagcaatttttg
gatttaatcatcataaaaattttagctagcaagcattataagctagtgagtaattatgaa
caaaatatttgttttgtaaaagatgatgagagcaaggaagtcattaaggcaaaaagtaaa
gacgatgatgatgtaattgaggctattttgatgcatttaagaaagagtgaaaaagcatga
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