Clostridium sp. SY8519: CXIVA_05290
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Entry
CXIVA_05290 CDS
T01565
Name
(GenBank) hypothetical protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cls
Clostridium sp. SY8519
Pathway
cls03030
DNA replication
cls03430
Mismatch repair
cls03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CXIVA_05290
03430 Mismatch repair
CXIVA_05290
03440 Homologous recombination
CXIVA_05290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cls03032
]
CXIVA_05290
03400 DNA repair and recombination proteins [BR:
cls03400
]
CXIVA_05290
Enzymes [BR:
cls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CXIVA_05290
DNA replication proteins [BR:
cls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CXIVA_05290
DNA repair and recombination proteins [BR:
cls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CXIVA_05290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
Secretin
Motif
Other DBs
NCBI-ProteinID:
BAK46496
LinkDB
All DBs
Position
complement(555269..558775)
Genome browser
AA seq
1168 aa
AA seq
DB search
MAFAHLHVHTEYSLLDGSNKIKEYVHRVKELGMTAAAITDHGVMYGVIDFYRAALAEGIR
PILGCEVYVAPGSRLDRESSHGEDRYYHLVLLAENNQGYSNLMKIVSLGFTEGYYYRPRV
DMETLEKYHEGIIATSACLAGEVQRLLLRGQYEKARETALRYEACFGRGNYFLELQDHGL
PEQKQVNQELMRLHADTGIELVATNDIHYTYAEDAEPHDILLCLQTGKKLSDEDRMRYTG
GQYYVKSEEEMRRLFPYAQEAIDNTQKIADRCQVEIEFGVTKLPKYDVPEGYTSWEYLNK
LCEQGLSRCYPGREEEIRPQLNYELSVIRKMGYVDYFLIVWDFIHYARKHDIMVGPGRGS
AAGSLVSYTLGITKLDPDRYQLLFERFLNPERVSMPDIDVDFCYERRQEVIDYVVRKYGK
DRVVQIVTFGTLAARGVIRDVGRVMDLPYALCDSIAKMIPNELNITIQKALQMNRKLREL
YETDETVHRLIDMSRRLEGLPRHTSMHAAGVVISQKSVDEYVPLSRASDGTITTQFTMTT
LEELGLLKMDFLGLRTLTVIQNAVYNVRDTEGKQIDVDAIDYGDPKVFASLGTGRTEGVF
QLESAGMKNFMKELKPRNLEDVIAGISLYRPGPMDFIPAYIKGKNHPESITYDCPQLEPI
LAPTYGCIVYQEQVMQIVQNLAGYTLGRADLVRRAMSKKKGDVMQRERQNFVYGNPEEGV
PGCIANGISEEIANRIFDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKYYYPEEFMAALMT
SVMDNSAKIAEYIQVCRSMGIQVLPPDINEGKGAFSVVNGEQGKAIRYGLSAIKSIGRPV
IEAIVRERESGGAFHSLHDFAERLSGREVNKRAFENFIKAGAFDSLGGSRRQMMMVYGML
VDQVSRNRKNMISGQMSLFDLVPEEERQNFEIHYPEVEDYTEAERLAMEKEVLGVYISGH
PLQAEEAKWRSSITRVTKDFIPDESTGEARVQDGERAVIGGLIENKTVKYTKKNQAMAFL
TIEDLYGSVEVIVFPRDFEKYGDLLNEDARIFVAGRVSLEEDKNGKLICEQIESFEACRR
ELWIQFPDLDTYEQQKDTLRELLHLSDGRDEVVLYLNREKAVKRLGRNQTIDIQQDLVNE
LEAQFGKENIAVREKPADLKRPVYRSSR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgcacatctgcacgtccacacagaatacagtctgctggacggatccaacaaa
ataaaagaatatgtacaccgtgtgaaggaactgggcatgactgccgcggccattaccgac
cacggagtgatgtacggcgtgattgatttttaccgcgcggcgttggccgagggtatccgt
ccgattctgggctgcgaggtatatgtggcacccggctcccggctggacagggaaagttcc
cacggggaagacaggtattaccacctggtgcttctggcggagaacaatcagggatacagc
aatctgatgaagattgtttccctggggtttaccgaagggtattactaccgtccccgggtg
gatatggaaacactggaaaagtatcatgaaggcatcattgccaccagcgcctgcctggcg
ggagaagtgcagcgcctcctgctgcggggacagtatgagaaggccagggaaaccgctctt
cgctatgaagcctgcttcggcagggggaattatttcctggagctgcaggaccacggcctg
ccggagcaaaagcaggtcaaccaggagctgatgcgtctgcatgcagacaccggcatcgaa
ctggtagccaccaatgatattcactatacctatgcggaagacgcggagccccatgacatt
ctcctgtgtctgcagaccggaaaaaaactgagtgatgaggatcggatgcgctacaccggc
ggtcagtattatgtcaaatccgaggaagagatgcgccgcctgtttccctacgcccaggaa
gccattgacaatacgcagaaaatcgcggacagatgtcaggtggaaatcgagtttggtgtc
acaaaacttccgaaatacgacgttccggaagggtatacatcctgggaatatctcaataag
ctctgtgaacagggcctttcccggtgttaccccggcagagaagaggaaatccgtccccag
ctgaactatgagctgtctgtcatccggaaaatgggttacgtggattatttcctgattgtc
tgggatttcattcactacgcgcggaaacatgatattatggtgggaccgggcagaggaagt
gccgccggatccctggtgtcctataccctgggcatcaccaagctggatcccgaccggtac
cagctgctgtttgagcgttttctgaacccggagcgggtctccatgccggatattgacgtg
gatttctgctatgagcgacggcaggaagtcatcgattatgtggtacgcaaatacggcaaa
gaccgggtggtgcagattgttacgtttggtacgctggcggcccggggcgtgatccgggat
gtgggcagagtcatggatcttccctacgcgctgtgtgacagcatcgcgaagatgattccc
aatgaactgaacatcactattcagaaggcgctgcagatgaaccggaagctcagggaactg
tatgagacagacgagaccgtgcaccgcctgattgacatgtccagacgcctggaggggctg
ccgcggcatacttccatgcacgcggcgggagtggtgatcagccagaagtctgtcgatgaa
tatgtccccctgtcccgggcttccgacggcacgattaccacacagtttaccatgacgacc
ctggaggaactgggacttctgaaaatggatttcctgggactccgcacattgacggtaatc
cagaacgctgtatataatgttcgggatacggaaggaaaacagatcgatgtggatgccatc
gattacggggatccgaaggttttcgcgtccctgggcaccgggcggaccgagggcgtgttc
cagctggaaagcgccggcatgaagaatttcatgaaagagctcaaaccccggaacctggag
gatgtgattgcgggaatttccctgtaccggccggggccgatggattttattcctgcctat
atcaaagggaaaaaccacccggagtccatcacgtatgactgcccgcagctggagccgata
ctggcgcctacctatggctgtattgtataccaggagcaggtgatgcagattgtgcagaat
ctggcggggtatacgctggggcgcgcggatctggtacgccgtgccatgtccaagaaaaag
ggcgatgtgatgcagcgggaacggcagaattttgtctacggcaatccggaggaaggggtt
ccgggctgtatcgccaatggaatttccgaagaaatcgccaaccggatttttgacgaaatg
acggattttgccaaatacgcgtttaacaagtcccatgcggcggcatatgcagtggtatct
taccagaccgcttatctgaagtactattatccggaggagttcatggcggccctgatgaca
tcggtgatggataattccgcaaagattgccgaatatattcaggtgtgcagaagcatgggc
atccaggtgcttccgccggatattaacgaaggaaaaggcgctttttccgtagtaaacggc
gaacagggcaaagccatccgctacgggctgtcggctatcaaaagcatcggccggccggtg
attgaggcgattgtccgggaacgggagtccggcggcgcgttccactccctgcatgatttt
gccgagcgcctgtccggccgggaagtcaataagcgggcttttgagaatttcatcaaagcc
ggggcgtttgacagcctgggaggatcccgccggcagatgatgatggtctatgggatgctg
gtggatcaggtcagccggaaccggaaaaacatgatcagcgggcagatgtccctctttgat
ctggtaccggaggaagaacggcagaattttgaaatccattatccggaagtggaggattat
acggaagctgagcgcctggcgatggaaaaagaagtcctgggcgtgtacatcagcggccat
ccgctgcaggcggaagaagcgaaatggcgcagttccattacccgcgtcacaaaggacttt
attccggacgaatccaccggcgaggcccgtgtacaggatggagaacgtgcggttatcggt
ggacttattgagaataaaacggtaaagtatacgaagaagaaccaggcgatggccttcctt
accatcgaagatctttacggcagcgtggaggtaatcgtatttccccgtgattttgaaaaa
tacggagatcttctgaacgaagacgccagaatttttgtggccggccgggtttccctggag
gaggacaaaaacggaaagctgatctgcgaacaaatcgaatcatttgaagcatgcaggaga
gaactctggatacagtttccggatctggacacttatgaacagcagaaagataccctgcgg
gaactgctgcatctgtctgacggcagagatgaagtggtgctttatctgaaccgtgagaag
gcggtcaagcgcctgggaaggaatcagaccattgatatacagcaggacctggtgaatgag
ctggaggcacagttcggaaaagagaatatagcggtcagagaaaagccggcagacttgaaa
cgtccggtgtaccgctcctcccgataa
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