Clostridium sp. SY8519: CXIVA_18230
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Entry
CXIVA_18230 CDS
T01565
Name
(GenBank) predicted HD-superfamily hydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
cls
Clostridium sp. SY8519
Brite
KEGG Orthology (KO) [BR:
cls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cls03019
]
CXIVA_18230
Messenger RNA biogenesis [BR:
cls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CXIVA_18230
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
Cas3_HD
tRNA_anti-codon
TraI_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
BAK47789
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All DBs
Position
1962044..1962988
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AA seq
314 aa
AA seq
DB search
MKYIETLREGEHIGEVYLCKKKQSMVTKNGKPYDNLTLQDKTGLLNGKIWDVNSGGIGDF
DSMDYIYVVGDITIFQGAPQLNIRRVRKVSEGEYDPADYLPVSEKDIPTMYRELTEYIQK
LKNPHLKALAEVFFGNEAFARKFQQHSAAKSVHHGYVGGLLEHTLSVTKNCDFFSKQYPI
LNRDLLLTAAMLHDIGKLWELSSFPQNDYTDEGQLLGHIMIGASKIDKQIDRLPDFPKVL
KSELLHCILAHHGELEYGSPKKPALAEALALSMADNLDAKMETWKEATASLQEGNLEWQG
FNRLLDSNIRQTSR
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatattgaaacactgcgggaaggcgaacacattggagaagtctacctgtgcaaa
aagaaacagagcatggtaaccaagaatggaaaaccctatgacaacctgacccttcaggat
aagaccggtctgctgaacggaaaaatctgggatgtgaattccggaggaatcggagatttt
gattccatggactatatttatgtcgtaggggacatcacgattttccagggagcgccgcag
ctgaatatccggcgggtcagaaaagtcagcgaaggggaatacgatccggcggattatctg
cccgtcagtgaaaaggacattccaaccatgtacagggaactgacagagtacattcagaaa
ctgaaaaacccgcatctgaaggcgctggcagaagtgtttttcggaaatgaggcctttgcc
cgaaagttccagcagcattcagccgccaaaagcgtgcatcacggctatgtcggcggtctg
ctggagcataccctgtccgttacgaaaaactgcgactttttcagcaaacagtacccgatt
ctgaatcgggatctgctgctgacggcagccatgctgcatgacatcggcaaactgtgggaa
ctgtcttcgttcccgcagaatgattacaccgatgaggggcagctgctggggcacatcatg
atcggcgcttcaaaaatcgacaaacagatcgaccggctccctgatttcccgaaggtttta
aaatctgagttgctgcactgcatcctggcgcaccacggggagctggagtacggttccccg
aagaaaccggcgctggcggaagcactggcgctgagcatggcagacaatctggacgcaaag
atggagacctggaaagaagccaccgcttccctgcaggagggcaatctggaatggcagggc
tttaaccgcctgctggactccaatatccgtcagaccagccgataa
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