Clostridium sp. SY8519: CXIVA_22170
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Entry
CXIVA_22170 CDS
T01565
Symbol
UvrD
Name
(GenBank) superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cls
Clostridium sp. SY8519
Pathway
cls03420
Nucleotide excision repair
cls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CXIVA_22170 (UvrD)
03430 Mismatch repair
CXIVA_22170 (UvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cls03400
]
CXIVA_22170 (UvrD)
Enzymes [BR:
cls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CXIVA_22170 (UvrD)
DNA repair and recombination proteins [BR:
cls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CXIVA_22170 (UvrD)
MMR (mismatch excision repair)
Other MMR factors
CXIVA_22170 (UvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_22
AAA_30
AAA_12
AAA_11
EACC1
DUF5304
Motif
Other DBs
NCBI-ProteinID:
BAK48184
UniProt:
F7V605
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All DBs
Position
2423807..2425687
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AA seq
626 aa
AA seq
DB search
MIDSCQIRAARHRDGPMLVIAGPGSGKTTVITERTRWLIEGCGVPPSEILVLTFTRAAAG
EMRERFLRMTQGKNYPVCFGTFHAVFFMILKESFHYSASDILREEEKYAFFKERLYAHSI
VFDDEHTFIGQLIREISQLKNSGALPETCESPGMPAETFRRICQEYQEELRRRHGLDFDD
ILIRCRDLLTEHPEVRSAWQQRFSYILVDEFQDINPLQYQIVRMLAEPERNLFLVGDDDQ
SIYRFRGAKPELMLRVPQDYPDLIRVSLSVNYRSGAAIVSLASQLISRNRERYEKQIRPG
CRIRDRVFFRQYDSQQMQNLSIIGEIRRLLYQGMPAEEIAVLARTGRQLMLLTQQMDAYS
IPYHSRDHIPDPYHHWIMDDILCYLRAAVGSCSRSAILRIMNRPNRFLSRDGLPDPEVNW
NRWMAYYRNKNMDWLEGRVRRLQEDLKQLGGMRPYAALIYIRKGIGYEAFLQEYAESHGT
EAEELMDLLDAVTAHAAEYPSLEAWLAAVERIRKQVRRRPGPCGTEEKGVTVGTYHSSKG
LEFDAVFLPDLNERLIPHKRAVLEVDLEEERRMLYVAITRARKRLYLLVPAHIRNKETEP
SRFLKEMNLENALPSPPRQQDGEMPG
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacagctgtcagatacgggcagcccggcacagagacggccctatgctggtaatt
gccggtccgggatccggcaagactaccgtgattacagagcgcacccgctggctgattgaa
ggctgcggggtgcctccttctgaaattcttgttcttacatttaccagagccgctgcggga
gaaatgcgggaacggtttctccggatgacccagggaaaaaattatccggtctgtttcggt
acattccacgcggttttctttatgattctgaaagaatcctttcattattctgcctcagat
attcttcgtgaggaagaaaaatatgcttttttcaaagagcgtctttatgcgcattccatt
gtttttgatgacgaacatacttttatcgggcagctgatccgggagatcagtcagctgaaa
aattccggcgctttgccggaaacctgtgaatctccggggatgcctgcagaaactttccgt
aggatctgtcaggagtatcaggaagaactgcgccgcaggcacggactggattttgacgat
atcctgattcgctgcagggatcttctgacggaacatccggaggtgcgaagcgcctggcag
cagaggttttcctatattctggtggatgagtttcaggatattaatccgctccagtatcaa
attgtccgtatgctggcagaaccggaaagaaatctgttccttgtaggggatgatgaccag
tcgatctaccggttccgcggtgcgaaaccggagctgatgcttcgggtcccgcaggattat
ccggatctgatccgggtcagcctgtcggtcaattatcgcagcggagcagcaattgtttcc
ctggcctctcagctgatcagccggaaccgggagcgctatgaaaagcagatccgtccgggc
tgccggatccgggaccgggtgtttttccggcagtacgacagccagcagatgcagaatctg
agcatcataggggaaatccgacgtctgctgtatcaggggatgccagcggaggaaatcgcc
gttttggcccgcaccggccgtcagctgatgcttctgacccagcaaatggatgcatacagc
atcccctatcattccagggaccatattccggatccgtaccatcactggattatggatgat
atcctctgctatctgcgggctgccgtcggcagctgcagccgatccgcaatcctccgcatt
atgaatcggcccaaccgttttctttcccgggacgggctgccggatccggaggtgaactgg
aaccggtggatggcttattacagaaataaaaatatggactggctggaagggcgtgtgcgc
cggctgcaggaagatctgaagcagcttgggggaatgcggccctatgcggcgcttatttat
atacgcaaaggcatcgggtatgaagcgtttctgcaggaatacgcggagagtcacggaacg
gaagcggaagaactgatggatctcctggatgcagtcactgcccatgccgcggaatatccc
tccctggaagcgtggctggcagccgttgaaagaatccggaaacaggtccgccgccggccg
ggtccgtgtgggacagaagaaaaaggggtgacggtaggcacctatcattcctccaaaggg
ctggagtttgacgcggtgtttctgccggatttaaacgaaaggctcattccgcataaacgc
gcggtactggaagtcgatctggaggaagaacgccggatgctttacgtggcaattaccagg
gccagaaaaaggctctacctccttgtgcctgcgcatatacgcaacaaggagacagagcct
tccaggtttctgaaagaaatgaatctggagaacgccttgcctagccctccccgtcagcaa
gacggtgaaatgcctggatga
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