Clostridium sp. SY8519: CXIVA_23340
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Entry
CXIVA_23340 CDS
T01565
Symbol
TruB
Name
(GenBank) pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cls
Clostridium sp. SY8519
Brite
KEGG Orthology (KO) [BR:
cls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cls03016
]
CXIVA_23340 (TruB)
Enzymes [BR:
cls01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CXIVA_23340 (TruB)
Transfer RNA biogenesis [BR:
cls03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CXIVA_23340 (TruB)
Prokaryotic type
CXIVA_23340 (TruB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
BAK48301
UniProt:
F7V6C2
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All DBs
Position
complement(2538312..2539250)
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AA seq
312 aa
AA seq
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MRNGIIIVKKEKGFTSFDVVAKMRGICGQKKIGHTGTLDPDATGVLPVCLGKATKICELL
AGTDKEYEASLRLGITTDTQDSSGTVTGRFPTEHITPEEVREAAEQFHGFTEQIPPMYSA
LKVRGKKLYELARQGIEIERKPRRIHVSEIAVTRMCLPELSLRIVCSKGTYIRTICHDLG
QKLSCGAVMTELQRTRVAGFRLEQAHTLGEIQDLRDRGNLDTLLIPVDRVFGSVSFCRVR
PEWDVILRNGGKVPEDGICQEDASDPLQGGADAFGLPSEPDWIRMYLSDGTFVGIYHRAK
EASVLRPLKMFL
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaatggaataattatcgtaaagaaagaaaagggatttacatcctttgatgtagtg
gcgaagatgcgcggcatctgcggccagaaaaaaatcggacataccggaacgctggatccg
gacgccaccggcgtgcttccggtctgcctggggaaagcgaccaaaatatgcgaactcctt
gccggtacagacaaagaatatgaagcgtccctccggctggggattaccacagacacccag
gacagcagcggcacggttaccggcagattcccgacggaacacattactccggaggaagtc
cgcgaagccgcagaacagttccacggcttcacggaacagattccgccgatgtattccgca
ctgaaggtcagggggaaaaaactgtatgaacttgcccggcaggggattgagattgaacgg
aagccccgccggatccatgtatcagaaattgccgttacccgcatgtgtctgccggaactt
tccctgcggatcgtatgttccaagggcacttatatccgtacgatctgccatgacctggga
cagaaactgtcctgcggcgcagtgatgacggagctgcagcggacccgtgtggcgggattt
cgcctggagcaggcacatacgctgggtgagattcaggacctgcgggaccgggggaatctg
gataccctgctgattccggtggaccgtgtgttcgggtcagtttccttctgccgggtgcgg
ccggaatgggatgtgattctgagaaacggcggcaaagtgccggaagacggaatctgtcag
gaagatgcctcagacccgttacagggtggggctgacgctttcggccttccgtcggagccg
gactggatccgcatgtatctgtcagacggaacttttgtcgggatttatcaccgggcaaag
gaagcgtcggttttacgtccgctgaaaatgtttctgtaa
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