Clostridium bornimense: CM240_0486
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Entry
CM240_0486 CDS
T03165
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clt
Clostridium bornimense
Pathway
clt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CM240_0486 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clt03019
]
CM240_0486 (cshA)
03009 Ribosome biogenesis [BR:
clt03009
]
CM240_0486 (cshA)
Enzymes [BR:
clt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CM240_0486 (cshA)
Messenger RNA biogenesis [BR:
clt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CM240_0486 (cshA)
Ribosome biogenesis [BR:
clt03009
]
Prokaryotic type
rRNA helicases
CM240_0486 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Ferritin_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CDM67651
UniProt:
W6RSR9
LinkDB
All DBs
Position
rep1:518799..520364
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AA seq
521 aa
AA seq
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MENIKFKELGLNENVLKSIDEMGFEEPSKIQEKVIPVLLEGHDVIGQAQTGTGKTLAFGA
PVISNIPKGNHIKCLVLAPTRELAIQVNDELARIAKHSKTRILPVYGGQPIDRQIKAVKR
GVDIIVGTPGRVLDLINKKVIDLSKLNFLILDEADEMLNMGFIDDIESILKGANKERQTL
LFSATMPAEIKKLAKRYMKPESQHISIVKNTITGSTVSQFYFEVKNKDRFETLCRVIDVD
EPTAAIIFCKTKRGVDELVESMQSRGYSVEGMHGDMTQNHRMNTLRKFKEGSLEFLIATD
VAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANREGIAYTLVTAREYMTLKQIERT
TKGKIKRKEIPTIDDIFYAKYKNICERVQETLNGEDYKKFVPMVTELDEEYNLIEVSAAL
MSMIYSKEVSFDYTKNSIGSSKSKQVRLFLSVGKIDRVNPKTILSLLNQANVYKEDVGEI
DLFDKFSFVDVSERVLTSIMDKCNGKRVNGRRVRIEVAKGR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacataaaatttaaagaattaggattgaacgagaatgttttaaagtctatagat
gaaatgggctttgaagaaccttctaaaatccaagaaaaagttattcctgttttgttagaa
ggtcatgatgttatcggtcaggcacaaacaggaactggaaagacattagcatttggagca
ccggttattagtaatatacctaagggtaatcatataaaatgtcttgtattagctccgact
agagaattagcaatacaagtaaatgatgagttagctagaatagcaaaacattcaaaaact
agaatattaccagtgtatggtgggcaaccgatagatagacaaataaaggctgttaaaaga
ggcgttgacataatcgtaggtactccaggaagagttttagatttaattaacaaaaaggta
atagatctttcaaaattaaactttttaattcttgatgaagctgatgaaatgttaaatatg
ggattcattgatgatattgaatcaatattaaaaggagcaaataaggaaagacaaacgtta
ttattctccgcaacaatgccagctgaaattaaaaagttagctaaaagatatatgaaacca
gaatctcaacatatatcaattgtaaaaaatactattactggttcaacagtaagtcaattc
tactttgaagttaaaaataaagatagatttgaaacattatgtagagttatagatgtagat
gaaccaactgctgcaattatattctgtaagactaaaagaggcgttgatgagttagtagaa
tcaatgcaaagtagaggttatagtgtcgaaggaatgcacggggatatgacacaaaaccat
agaatgaatactcttagaaaatttaaagaaggaagtttagagttcttaattgctacagat
gttgccgcaagaggtattgatgtagaaaatgtatcacatgttataaattatgatttacca
caagatactgaaagttatgttcatagaattggtagaactggaagagctaacagagaaggt
attgcatatactttagttacagctagagaatatatgactttaaaacaaatagaaagaact
actaaaggtaaaattaaaagaaaagaaataccaacaattgatgatatattttatgctaaa
tataaaaacatatgtgagagagttcaagagactttaaatggagaagattataaaaagttt
gttccaatggttactgagttagatgaagaatataatcttatagaagtttcagcggcatta
atgagtatgatatatagtaaagaagtttcttttgattatactaagaactcaataggctca
tctaaatcaaaacaagtaagattattcttatcagtaggaaaaatagatagagtaaatcca
aagacaattttaagtttattgaatcaagctaatgtgtataaagaagatgtcggagaaata
gatttatttgataagtttagctttgtagatgtttcagaaagagtcttaacatctataatg
gataagtgtaatggtaagagagttaatggacgtagagttagaatagaagtggctaaaggt
agataa
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